@prefix this: <https://w3id.org/np/RALya-LF8ZjBa_h_Kmy1JToH3ZGKrV820_OnygYt5v5Zs> .
@prefix sub: <https://w3id.org/np/RALya-LF8ZjBa_h_Kmy1JToH3ZGKrV820_OnygYt5v5Zs/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>
    a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci dataset-resolvability assessor (Gemini 4 Argon)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "The claim states a sharp, quantitative length threshold (26 amino acids or 3.8 nm) with two clearly distinguishable mechanical outcomes (inter-protein sliding versus alpha-to-beta transition). While the original trajectories are not deposited and only the abstract is vendored in this corpus, coiled-coil dimer coordinates are readily available in the PDB and both the shear-lag analytical balance and variable-length steered MD tests can be executed with open tools like GROMACS. It scores as partially resolvable because verifying the asymptotic low-rate crossover across sequences and comparing with experimental single-molecule pulling data faces rate-extrapolation and sequence-dependence confounds.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Construct homodimeric alpha-helical coiled-coils with lengths spanning 15 to 45 residues from PDB templates, perform steered MD shear-pulling simulations at multiple pulling velocities in GROMACS to extrapolate to the asymptotic low-rate limit, and classify each trajectory by whether failure occurs via inter-chain sliding or intra-chain alpha-to-beta secondary structure conversion. Confirmation requires a sharp crossover near 26 residues (3.8 nm) separating sliding for L < L* from alpha-to-beta transition for L > L*.";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2010-helix-sheet-01: partially-resolvable, resolvability 0.69";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Direct experimental single-molecule force spectroscopy systematically varying coiled-coil length across the 26-residue threshold is scarce.",
      "Extrapolating steered MD results to the asymptotic vanishing-pulling-rate limit requires multi-rate simulation campaigns across several orders of magnitude in pulling speed.",
      "Only the abstract is openly vendored here, so exact boundary conditions, pulling geometry, and force-field details from the full paper are not in the local text.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.8"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/buehler-2010-helix-sheet-01--gemini--dataset-1>,
      <https://w3id.org/delphi/resource/evidence/buehler-2010-helix-sheet-01--gemini--dataset-2>;
    <https://w3id.org/delphi/ontology/hasScore> "0.685"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasVerdict> "partially-resolvable" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--analysis-feasibility>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Analysis feasibility of buehler-2010-helix-sheet-01 by Gemini 4 Argon: 0.7";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/analysis-feasibility";
    <https://w3id.org/delphi/ontology/hasScore> "0.7"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--data-adequacy>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data adequacy of buehler-2010-helix-sheet-01 by Gemini 4 Argon: 0.55";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-adequacy";
    <https://w3id.org/delphi/ontology/hasScore> "0.55"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--data-existence>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data existence of buehler-2010-helix-sheet-01 by Gemini 4 Argon: 0.6";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-existence";
    <https://w3id.org/delphi/ontology/hasScore> "0.6"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--discriminating-power>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2010-helix-sheet-01 by Gemini 4 Argon: 0.75";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.75"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2010-helix-sheet-01 by Gemini 4 Argon: 0.85";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/operationalizability";
    <https://w3id.org/delphi/ontology/hasScore> "0.85"^^xsd:double .
  
  <https://w3id.org/delphi/resource/claim/buehler-2010-helix-sheet-01> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--analysis-feasibility>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--data-adequacy>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--discriminating-power>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2010-helix-sheet-01--gemini--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "Atomic structures of canonical alpha-helical coiled-coil dimers (such as vimentin rod segments and GCN4 leucine zippers) for variable-length steered MD";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: RCSB Protein Data Bank";
    prov:wasDerivedFrom <https://www.rcsb.org/> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2010-helix-sheet-01--gemini--dataset-2>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "Open-source molecular dynamics engine for running steered pulling simulations and DSSP secondary-structure tracking across coiled-coil lengths";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: GROMACS Molecular Dynamics Package";
    prov:wasDerivedFrom <https://www.gromacs.org/> .
  
  <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gemini-4-argon-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/batch-3.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
  <https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2010-helix-sheet-01--gemini>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2010-helix-sheet-01: partially-resolvable, resolvability 0.69";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
    npx:hasSignature "siEJm+A4zIChUjIPGG5AUpmySQRjVtQrdKHsj1+UtolqdAEax2p1zydYQmek5Rg2QUbIlgUTmZOXiDjOGl9zBvnyFNX6HszgOzJFWa0npfsySkv6mdPDmIKi91dFx+a2ZFhCFnqOXdeDra9xSN7qMRMRCx7ME8tuZMucWsOl2z6fOe3bmhgLtgbxWJ+SxOUHZBgn1/kpHXdTf3bHyT9x6XP5y4QELcNg0X33huGuNvzE5oaqgreillLVm6YuvHkb0/w2FdCAtilrk51REY89PJCyj5wC5/lvlPZ1zrvD/9Ts4RXOkjE8+ii7MJh7eDGntZp69Cu2CuDQq3+UB7q3yA==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}