[ { "@id": "https://w3id.org/np/RALOQCbeM_zobFInzUOgbQxJuTGAApmiNpi1GyDrbRSW0/assertion", "@graph": [ { "@id": "https://w3id.org/delphi/resource/assessment/aristotle-ha05-35--claim-test", "http://purl.org/dc/terms/description": [ { "@value": "analysis.py downloads the named Dryad files and looks for a column that records feeding, intake, frass, or excretion on a row whose stage is pupa or chrysalis. Support required an explicit pupal zero for both feeding and excretion, plus larval feeding. A positive pupal feeding or frass value would refute. A file that names those words but has no such column leaves the claim untested." } ], "@type": [ "https://w3id.org/delphi/ontology/Assessment" ], "http://www.w3.org/2000/01/rdf-schema#comment": [ { "@value": "Measured: 0 rows whose stage column says pupa or chrysalis (n = 4, a word occurrence is not a feeding measurement). Interpretation: Aristotle's caterpillar and chrysalis are the larval and pupal stages of a butterfly. The extension to bees, wasps, and other insects that develop from a grub is the holometabolous pupa. Feeding is ingestion. Voiding excrement is frass or faeces produced during that stage. Meconium released when the adult emerges is not pupal defecation and is excluded by the fail rule. The Asota files to be read are README.md, Instar_Data.txt, and Instar_Data_Asota_eusemioides.txt. From the chrysalis dataset only Supplementary material, S3.xlsx is admissible; the videos are not downloaded." } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Claim test of aristotle-ha05-35: inconclusive, confidence 0.72" } ], "http://www.w3.org/2000/01/rdf-schema#seeAlso": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha05-35/result.json" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ], "https://w3id.org/delphi/ontology/admissibleDatasets": [ { "@value": "Public Dryad files that label insect developmental stage and a feeding or excretion quantity. Two named deposits: 10.5061/dryad.tmpg4f553 (instar files and README only) and 10.5061/dryad.b451g (S3.xlsx only). A dataset that never mentions the pupa cannot confirm the pupal clause." } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "claim-test/0.1.0" } ], "https://w3id.org/delphi/ontology/dataKind": [ { "@value": "none" } ], "https://w3id.org/delphi/ontology/disconfirmingObservation": [ { "@value": "A pupa or chrysalis is recorded as feeding or as producing frass before adult emergence." } ], "https://w3id.org/delphi/ontology/evidenceAgainst": [ { "@value": "Absence of a pupal feeding column is not evidence that pupae do not feed." }, { "@value": "The README says caterpillars fed and produced frass, and that larvae entered pupation. It does not record a pupal feeding or excretion value of zero, so that prose is not a pass." }, { "@value": "The chrysalis spreadsheet is a CT volume table (gut, tracheae, air lumen, and other structures by day). It does not record food intake or frass. The videos were not downloaded." }, { "@value": "The instar tables record caterpillar body size for instars 1 to 4. They have no feeding, frass, or pupal column." } ], "https://w3id.org/delphi/ontology/expectedObservation": [ { "@value": "Larval rows show feeding or frass, and pupal rows explicitly record no feeding and no excretion." } ], "https://w3id.org/delphi/ontology/failCriterion": [ { "@value": "Refutes if any pupal or chrysalis record in the planned files shows feeding, food intake, or frass during the pupal stage. Excretion labelled as meconium or as occurring at adult emergence does not count as pupal excretion. If the files contain no pupal stage at all: inconclusive, reason data-unavailable. If larvae are shown to feed but the pupa is only unmeasured: inconclusive, reason data-unavailable, not a support." } ], "https://w3id.org/delphi/ontology/hasConfidence": [ { "@value": "0.72", "@type": "http://www.w3.org/2001/XMLSchema#double" } ], "https://w3id.org/delphi/ontology/hasEvidence": [ { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha05-35--claim-test--dataset-1" }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha05-35--claim-test--dataset-2" } ], "https://w3id.org/delphi/ontology/hasVerdict": [ { "@value": "inconclusive" } ], "https://w3id.org/delphi/ontology/hypothesis": [ { "@value": "If caterpillars feed and void excrement and chrysalises do neither, and the same is true of other insects that develop from a grub, then a public rearing table that records both stages will show larval feeding or frass and explicit zero feeding and zero excretion in the pupa." } ], "https://w3id.org/delphi/ontology/inferenceMethod": [ { "@value": "Read stage labels and any column whose name or README definition is feeding, intake, frass, faeces, or excretion. Support requires an explicit pupal zero on both feeding and excretion. A pupal positive refutes. Absence of the pupal stage is data-unavailable." } ], "https://w3id.org/delphi/ontology/passCriterion": [ { "@value": "Supports only if the same dataset records larval feeding or larval frass for a butterfly, bee, or wasp (or another holometabolous insect if those three are absent) AND records the pupal or chrysalis stage with feeding explicitly zero and excretion explicitly zero. Missing pupal rows are not a zero." } ], "https://w3id.org/delphi/ontology/preregistered": [ { "@value": "false", "@type": "http://www.w3.org/2001/XMLSchema#boolean" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha05-35--claim-test--dataset-1", "http://purl.org/dc/terms/description": [ { "@value": "stage labels and any feeding or frass columns" } ], "http://purl.org/dc/terms/license": [ { "@value": "see Dryad dataset" } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Dataset: Fontanilla et al. 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