https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk/Head
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk
http://www.nanopub.org/nschema#hasAssertion
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk/assertion
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk
http://www.nanopub.org/nschema#hasProvenance
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk/provenance
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk
http://www.nanopub.org/nschema#hasPublicationInfo
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk/pubinfo
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.nanopub.org/nschema#Nanopublication
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk/assertion
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
http://purl.org/dc/terms/description
Downloaded the three Dryad version zips named in the pre-registration. Every table was scanned for a numeric sperm or milt amount of 0, or for a treatment label in the pre-registered list, and for a fertilization column. A package counts only when both are in the same table. No fertilization rate from a sperm-exposed row was used as a verdict.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/Assessment
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
http://www.w3.org/2000/01/rdf-schema#comment
Measured: 0 planned packages with a scoreable no-milt arm (n = 3). Interpretation: The sentence has two parts: the male sprinkles milt over eggs after they are laid, and only the eggs the milt reaches are fertilized. This test is the second part. External fertilization after laying is the scope, so salmon, trout, zebrafish and the round goby are inside it, and internally fertilizing fishes are outside it. Egg activation without cleavage is not scored as fertilization. The test does not ask how many sperm are required once milt has reached the egg.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
http://www.w3.org/2000/01/rdf-schema#label
Claim test of aristotle-ga01-34: inconclusive, confidence 0.62
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
http://www.w3.org/2000/01/rdf-schema#seeAlso
https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga01-34/result.json
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
http://www.w3.org/ns/prov#wasAttributedTo
https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/admissibleDatasets
A public table that scores fertilization of fish eggs in a no-milt arm and in a milt arm from the same experiment. A table in which every egg was mixed with sperm, a fertilization-mode code, and a login wall do not count. Animals other than oviparous externally fertilizing fishes do not count.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/assessmentType
claim-test/0.1.0
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/dataKind
none
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/disconfirmingObservation
Eggs recorded as not reached by milt are fertilized at a rate of 20 percent or more.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/evidenceAgainst
Before this registration the Dryad landing records, file names, byte sizes and the zebrafish README were read. The zebrafish README describes in-vitro fertilization of FRF-selected and non-selected sperm, which is not a no-milt arm. The numeric tables and workbooks were not opened. No fertilization proportion was computed.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/evidenceAgainst
FishBase was named by the assessors and was not used. A fertilization-mode field does not say whether an egg the milt missed stays unfertilized.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/evidenceAgainst
No planned table contained a no-milt arm together with a fertilization column. Fertilization rates from rows that were all exposed to sperm were not turned into a verdict.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/evidenceAgainst
Salmon and trout are oviparous external fertilizers, as are the zebrafish and the round goby. Tables for other animal groups were not in these packages.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/evidenceAgainst
The three packages are the public fish tables checked. A no-milt table outside them would be a different test.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/expectedObservation
In an oviparous externally fertilizing fish, eggs recorded as not reached by milt are unfertilized, and eggs from the same experiment that were reached by milt are fertilized.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/failCriterion
Pre-registered refutation rule. A species fails if its no-milt arm mean fertilization proportion is at least 0.20 and that arm has at least 20 eggs or at least 3 replicate rows. Any such species refutes the claim. If one species passes and another fails, the verdict is mixed. If every planned file downloads and none contains a no-milt arm for an oviparous externally fertilizing fish, the verdict is inconclusive with reason data-unavailable. Rows from anemones, urchins, mussels, frogs, or any animal that is not a fish are ignored. If a planned file cannot be downloaded and no downloaded file contains a no-milt arm, the verdict is inconclusive with reason data-unavailable. A mean strictly between 0.05 and 0.20 on a no-milt arm, with the sample-size minimum met and the milt arm at least 0.50, is neither a pass nor a fail: that species is intermediate, and the verdict is mixed if no species fails. If a no-milt arm exists but fewer than 20 eggs and fewer than 3 rows were scored, and no species fails, the verdict is inconclusive with reason underpowered.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/hasConfidence
0.62
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/hasEvidence
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-1
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/hasEvidence
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-2
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/hasEvidence
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-3
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/hasVerdict
inconclusive
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/hypothesis
If the claim holds, eggs of an oviparous externally fertilizing fish that milt does not reach remain unfertilized, while eggs from the same experiment that milt does reach are fertilized.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/inferenceMethod
Search the three planned files for a no-milt arm as defined in pass_criterion. If none exists, the verdict is inconclusive with reason data-unavailable, and fertilization rates from sperm-exposed rows are not scored. If an arm exists, compare its mean fertilization proportion with 0.05 and 0.20, and the milt arm with 0.50, at the pre-registered sample sizes.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/passCriterion
Pre-registered support rule. Only an oviparous fish with external fertilization counts. The planned files are the zebrafish fertilization table (Dryad 10.5061/dryad.crjdfn38v), the round-goby egg and sperm tables (Dryad 10.5061/dryad.6djh9w10z), and the salmon and trout fertilization workbooks (Dryad 10.5061/dryad.v933m). A no-milt arm is a set of rows whose numeric sperm, milt, or sperm-concentration value is 0, or whose treatment label matches, case-insensitively, one of: no sperm, no milt, without sperm, without milt, unexposed, sperm-free, sperm free, zero sperm, 0 sperm, seawater only, water only, unfertilized control, no male, males absent, milt absent. A milt arm is the other rows of that same table in which sperm or milt was added: a positive amount, or a label that is not the no-milt arm. Fertilization proportion is fertilized eggs divided by eggs scored, a percent column divided by 100, or a proportion already on 0 to 1. A species passes if the no-milt arm mean is at most 0.05, the milt arm mean is at least 0.50, and each arm has at least 20 eggs or at least 3 replicate rows. The claim is supported only when at least one species passes and no species with both arms fails. Two treatments that both add sperm, including selected versus non-selected sperm, are not a no-milt arm. FishBase fertilization-mode codes are not a test of this claim.
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/ontology/preregistered
false
https://w3id.org/delphi/resource/claim/aristotle-ga01-34
https://w3id.org/delphi/ontology/hasAssessment
https://w3id.org/delphi/resource/assessment/aristotle-ga01-34--claim-test
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-1
http://purl.org/dc/terms/description
candidate fertilization table for Danio rerio; scored only if a no-milt arm is present
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-1
http://purl.org/dc/terms/license
CC0 1.0
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-1
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/EvidenceItem
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-1
http://www.w3.org/2000/01/rdf-schema#label
Dataset: Female reproductive fluids attract more and better sperm in zebrafish
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-1
http://www.w3.org/ns/prov#atLocation
https://datadryad.org/api/v2/versions/241008/download
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-1
http://www.w3.org/ns/prov#wasDerivedFrom
https://datadryad.org/dataset/doi:10.5061/dryad.crjdfn38v
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-1
https://w3id.org/delphi/ontology/hasChecksum
sha256:83dbb1bf09205bd82fc80666322e1e47ab5bd46d9aefb2bf3e2f1c0a7dff8b56
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-2
http://purl.org/dc/terms/description
candidate fertilization table for Neogobius melanostomus; scored only if a no-milt arm is present
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-2
http://purl.org/dc/terms/license
CC0 1.0
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-2
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/EvidenceItem
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-2
http://www.w3.org/2000/01/rdf-schema#label
Dataset: Sperm performance limits the reproduction of an invasive fish in novel salinities
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-2
http://www.w3.org/ns/prov#atLocation
https://datadryad.org/api/v2/versions/106291/download
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-2
http://www.w3.org/ns/prov#wasDerivedFrom
https://datadryad.org/dataset/doi:10.5061/dryad.6djh9w10z
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-2
https://w3id.org/delphi/ontology/hasChecksum
sha256:32a8476fa6f3afbe6d8f514b36772527c2f3f0057d50a745f1a7736f0a51c4d5
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-3
http://purl.org/dc/terms/description
candidate fertilization table for Salmo salar / Salmo trutta; scored only if a no-milt arm is present
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-3
http://purl.org/dc/terms/license
CC0 1.0
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-3
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/delphi/ontology/EvidenceItem
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-3
http://www.w3.org/2000/01/rdf-schema#label
Dataset: Cryptic choice of conspecific sperm controlled by ovarian fluid in salmon and trout
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-3
http://www.w3.org/ns/prov#atLocation
https://datadryad.org/api/v2/versions/8842/download
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-3
http://www.w3.org/ns/prov#wasDerivedFrom
https://datadryad.org/dataset/doi:10.5061/dryad.v933m
https://w3id.org/delphi/resource/evidence/aristotle-ga01-34--claim-test--dataset-3
https://w3id.org/delphi/ontology/hasChecksum
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https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk/provenance
https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.w3.org/ns/prov#SoftwareAgent
https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast
http://www.w3.org/2000/01/rdf-schema#label
delphisci claim tester (grok-4.7-high-fast; cursor/aristotle-biology-claim-tests-957f)
https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast
http://www.w3.org/ns/prov#actedOnBehalfOf
https://orcid.org/0009-0007-4948-9192
https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast
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grok-4.7-high-fast
https://w3id.org/delphi/resource/model/grok-4-7-high-fast
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https://w3id.org/delphi/ontology/LanguageModel
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk/assertion
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https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk/assertion
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https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md
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https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast
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https://w3id.org/delphi/ontology/Assessment
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http://www.w3.org/2000/01/rdf-schema#label
Claim test of aristotle-ga01-34: inconclusive, confidence 0.62
https://w3id.org/np/RAKvYMJM0_w0XfiNycoQzgNZyXiCCuDa9LfJp8XiE6Afk
https://w3id.org/delphi/ontology/domain
https://w3id.org/delphi/resource/domain/aristotle-biology
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http://purl.org/nanopub/x/hasAlgorithm
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