https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/Head
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k
http://www.nanopub.org/nschema#hasAssertion
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/assertion
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k
http://www.nanopub.org/nschema#hasProvenance
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/provenance
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k
http://www.nanopub.org/nschema#hasPublicationInfo
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/pubinfo
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
http://www.nanopub.org/nschema#Nanopublication
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/assertion
http://purl.org/nanopub/temp/np-3ed6d70b-7d4a-4c02-9ef4-ddfceb668e77
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://schema.org/Dataset
http://purl.org/nanopub/temp/np-3ed6d70b-7d4a-4c02-9ef4-ddfceb668e77
https://w3id.org/np/snakemake/describesWorkflow
https://w3id.org/np/RAOBjU_aTRgW5zb2MFGvZPAXBZegQRzVoUU-aSGQFpxh4
http://purl.org/nanopub/temp/np-3ed6d70b-7d4a-4c02-9ef4-ddfceb668e77
https://w3id.org/np/snakemake/generatedAt
2026-03-12T23:46:19.400914+00:00
http://purl.org/nanopub/temp/np-3ed6d70b-7d4a-4c02-9ef4-ddfceb668e77
https://w3id.org/np/snakemake/hasSummary
http://purl.org/nanopub/temp/ws-19dbbdbd-4f4d-4f12-bd93-a594d5c75e3c
http://purl.org/nanopub/temp/np-3ed6d70b-7d4a-4c02-9ef4-ddfceb668e77
https://w3id.org/np/snakemake/hasWorkflowRun
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
http://purl.org/nanopub/temp/param-bwa_mem-1
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/Parameterization
http://purl.org/nanopub/temp/param-bwa_mem-1
https://w3id.org/np/snakemake/parameterIndex
1
http://purl.org/nanopub/temp/param-bwa_mem-1
https://w3id.org/np/snakemake/parameterValue
-R '@RG\tID:{sample}\tSM:{sample}'
http://purl.org/nanopub/temp/param-bwa_mem-2
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/Parameterization
http://purl.org/nanopub/temp/param-bwa_mem-2
https://w3id.org/np/snakemake/parameterIndex
2
http://purl.org/nanopub/temp/param-bwa_mem-2
https://w3id.org/np/snakemake/parameterValue
samtools
http://purl.org/nanopub/temp/param-bwa_mem-3
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/Parameterization
http://purl.org/nanopub/temp/param-bwa_mem-3
https://w3id.org/np/snakemake/parameterIndex
3
http://purl.org/nanopub/temp/param-bwa_mem-3
https://w3id.org/np/snakemake/parameterValue
coordinate
http://purl.org/nanopub/temp/param-bwa_mem-4
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/Parameterization
http://purl.org/nanopub/temp/param-bwa_mem-4
https://w3id.org/np/snakemake/parameterIndex
4
http://purl.org/nanopub/temp/param-bwa_mem-4
https://w3id.org/np/snakemake/parameterValue
http://purl.org/nanopub/temp/param-samtools_index-1
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/Parameterization
http://purl.org/nanopub/temp/param-samtools_index-1
https://w3id.org/np/snakemake/parameterIndex
1
http://purl.org/nanopub/temp/param-samtools_index-1
https://w3id.org/np/snakemake/parameterValue
http://purl.org/nanopub/temp/rule-all
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/WorkflowRule
http://purl.org/nanopub/temp/rule-all
https://w3id.org/np/snakemake/hasSoftwarePackage
all
http://purl.org/nanopub/temp/rule-all
https://w3id.org/np/snakemake/ruleName
all
http://purl.org/nanopub/temp/rule-bcftools_call
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/WorkflowRule
http://purl.org/nanopub/temp/rule-bcftools_call
https://w3id.org/np/snakemake/hasOutput
calls/all.vcf
http://purl.org/nanopub/temp/rule-bcftools_call
https://w3id.org/np/snakemake/hasSoftwarePackage
envs/bcftools.yml
http://purl.org/nanopub/temp/rule-bcftools_call
https://w3id.org/np/snakemake/hasSoftwarePackage
shell
http://purl.org/nanopub/temp/rule-bcftools_call
https://w3id.org/np/snakemake/ruleName
bcftools_call
http://purl.org/nanopub/temp/rule-bwa_mem
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/WorkflowRule
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/hasOutput
sorted_reads/A.bam
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/hasOutput
sorted_reads/B.bam
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/hasOutput
sorted_reads/{sample}.bam
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/hasParameterization
http://purl.org/nanopub/temp/param-bwa_mem-1
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/hasParameterization
http://purl.org/nanopub/temp/param-bwa_mem-2
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/hasParameterization
http://purl.org/nanopub/temp/param-bwa_mem-3
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/hasParameterization
http://purl.org/nanopub/temp/param-bwa_mem-4
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/hasSoftwarePackage
envs/bwa.yml
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/hasSoftwarePackage
v8.1.1/bio/bwa/mem
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/parametersJSON
["-R '@RG\\tID:{sample}\\tSM:{sample}'", "samtools", "coordinate", ""]
http://purl.org/nanopub/temp/rule-bwa_mem
https://w3id.org/np/snakemake/ruleName
bwa_mem
http://purl.org/nanopub/temp/rule-plot_positions
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/WorkflowRule
http://purl.org/nanopub/temp/rule-plot_positions
https://w3id.org/np/snakemake/hasOutput
calls/positions.png
http://purl.org/nanopub/temp/rule-plot_positions
https://w3id.org/np/snakemake/hasSoftwarePackage
envs/matplotlib.yml
http://purl.org/nanopub/temp/rule-plot_positions
https://w3id.org/np/snakemake/hasSoftwarePackage
scripts/plot-positions.py
http://purl.org/nanopub/temp/rule-plot_positions
https://w3id.org/np/snakemake/ruleName
plot_positions
http://purl.org/nanopub/temp/rule-plot_quals
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/WorkflowRule
http://purl.org/nanopub/temp/rule-plot_quals
https://w3id.org/np/snakemake/hasOutput
calls/quals.png
http://purl.org/nanopub/temp/rule-plot_quals
https://w3id.org/np/snakemake/hasSoftwarePackage
envs/matplotlib.yml
http://purl.org/nanopub/temp/rule-plot_quals
https://w3id.org/np/snakemake/hasSoftwarePackage
scripts/plot-quals.py
http://purl.org/nanopub/temp/rule-plot_quals
https://w3id.org/np/snakemake/ruleName
plot_quals
http://purl.org/nanopub/temp/rule-samtools_index
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/WorkflowRule
http://purl.org/nanopub/temp/rule-samtools_index
https://w3id.org/np/snakemake/hasOutput
sorted_reads/A.bam.bai
http://purl.org/nanopub/temp/rule-samtools_index
https://w3id.org/np/snakemake/hasOutput
sorted_reads/B.bam.bai
http://purl.org/nanopub/temp/rule-samtools_index
https://w3id.org/np/snakemake/hasOutput
sorted_reads/{sample}.bam.bai
http://purl.org/nanopub/temp/rule-samtools_index
https://w3id.org/np/snakemake/hasParameterization
http://purl.org/nanopub/temp/param-samtools_index-1
http://purl.org/nanopub/temp/rule-samtools_index
https://w3id.org/np/snakemake/hasSoftwarePackage
envs/samtools.yml
http://purl.org/nanopub/temp/rule-samtools_index
https://w3id.org/np/snakemake/hasSoftwarePackage
v5.7.0/bio/samtools/index
http://purl.org/nanopub/temp/rule-samtools_index
https://w3id.org/np/snakemake/parametersJSON
[""]
http://purl.org/nanopub/temp/rule-samtools_index
https://w3id.org/np/snakemake/ruleName
samtools_index
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/WorkflowRun
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/configJSON
{"samples": {"A": "data/samples/A.fastq", "B": "data/samples/B.fastq"}}
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/configfile
config/config.yaml
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/dagSource
Snakefile
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/dagSource
config/config.yaml
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/dagSource
envs/bcftools.yml
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/dagSource
envs/bwa.yml
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/dagSource
envs/matplotlib.yml
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/dagSource
envs/samtools.yml
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/dagSource
scripts/plot-positions.py
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/dagSource
scripts/plot-quals.py
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/description
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/hasRule
http://purl.org/nanopub/temp/rule-all
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/hasRule
http://purl.org/nanopub/temp/rule-bcftools_call
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/hasRule
http://purl.org/nanopub/temp/rule-bwa_mem
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/hasRule
http://purl.org/nanopub/temp/rule-plot_positions
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/hasRule
http://purl.org/nanopub/temp/rule-plot_quals
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/hasRule
http://purl.org/nanopub/temp/rule-samtools_index
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/includedSnakefile
/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/mainSnakefile
/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile
http://purl.org/nanopub/temp/wr-12ebd539-8a35-4149-83e1-822249e0afff
https://w3id.org/np/snakemake/workflowMetadataJSON
{}
http://purl.org/nanopub/temp/ws-19dbbdbd-4f4d-4f12-bd93-a594d5c75e3c
http://www.w3.org/1999/02/22-rdf-syntax-ns#type
https://w3id.org/np/snakemake/WorkflowSummary
http://purl.org/nanopub/temp/ws-19dbbdbd-4f4d-4f12-bd93-a594d5c75e3c
https://w3id.org/np/snakemake/numberOfJobs
8
http://purl.org/nanopub/temp/ws-19dbbdbd-4f4d-4f12-bd93-a594d5c75e3c
https://w3id.org/np/snakemake/numberOfResults
2
http://purl.org/nanopub/temp/ws-19dbbdbd-4f4d-4f12-bd93-a594d5c75e3c
https://w3id.org/np/snakemake/numberOfRules
6
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/provenance
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/assertion
http://www.w3.org/ns/prov#generatedAtTime
2026-03-13T00:46:19.435998
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/assertion
http://www.w3.org/ns/prov#wasAttributedTo
https://orcid.org/0000-0003-2408-7588
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/pubinfo
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k
http://www.w3.org/ns/prov#generatedAtTime
2026-03-13T00:46:19.435998
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k
http://www.w3.org/ns/prov#wasAttributedTo
https://orcid.org/0000-0003-2408-7588
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/sig
http://purl.org/nanopub/x/hasAlgorithm
RSA
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/sig
http://purl.org/nanopub/x/hasPublicKey
MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkOFUnnRCp/k9/0ugvx8zQJ+Qc675W1Ug6F839+xvJ2QsSBu4iOJ1O2kJCmb3tALp3gJOt8sffRot3VrfY1hbgXxL7BVtDsfHHmXVff4YCeg5Ycdn5cDpLawDpAdYwMhK0LwIkZ3fwH9/o9JniYKXLV/jpF9bMKyiw/6tqlCHaMW1r8gzZzoxVIAakwvlABoY0iNoToLTlBRXEI4mLUNjDMnMwQgfh1KXMxMruNjW3wJyeDEIfa2ooAt0E4CRM9pkrEb37NzD9Jz8aSUFFY6BvIxF4ixK7rm6IUDvQ76LqXkEmgSeRv1kw7gnCe9wV/wHd0ZeW4heoBXmLHX3MvHfjwIDAQAB
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/sig
http://purl.org/nanopub/x/hasSignature
CsZhIYGA8HMokB9nNL9ZE26JirWl7b2Tj9LgWxe0yx9x/EGEKAySXjshsq2AbMY9FrF9MGCzqIxMwWkYiJmGgDW2T/hrocVJS9MXbmFwiskFt98puFC2n/pGnmA+exJknw2vqlsPemDOU2KIzkLapWA2ZqEFWNmH9noraiF+1j6CusQXo4sU8v6CYrLGS+xjUYC0kCutuvpcJnAAj2Z1Lsi1NQ++PwESTsvuF+epB0VebUJDiPY/byCNciaTq8rwaiVxvifY+8wAB3ui4SJowpvUq0MgT4vsTl8/TycqSi1fC2BE3jgOgFZhqmResXX0jT1z2yUtvSCEswyoRaozQA==
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/sig
http://purl.org/nanopub/x/hasSignatureTarget
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k
https://w3id.org/np/RAJkSUwwg_u_dDgCpvO6QjfwAeyj_GfMiLVGCjZxfEA2k/sig
http://purl.org/nanopub/x/signedBy
https://orcid.org/0000-0003-2408-7588