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For each 4-cell row, a percentage is the value in that column and a blank is zero. Nearest-integer counts are percent times n. Where the polar-furrow columns sum to about 100 percent, every embryo is in full contact and an X-furrow column counts an embryo that also meets at a point at the other pole. Where only one contact type is filled, the rest of the row are openings and are excluded. The pre-registered fractions are applied to the pooled full-contact embryos." } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "Assessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "Measured: 0.25 fraction of full-contact 4-cell embryos with an X-furrow (n = 20, counts are nearest integers of the table percentages times n; see extra.unrounded). Interpretation: Thompson\'s claim is about the four-celled stage of a segmenting egg whose cells are in full fluid contact: the four cells cannot meet in one point, a short intermediate partition (the polar furrow) must be present, and drawings of a simple cross are error or imperfect observation. He allows the furrow to be very short. A central hole, where the four cells do not touch, is not full contact and is not counted as a counterexample. The claim is universal across such eggs; one phoronid study can refute it if four-way junctions are common, and can support it only for the animals actually scored. Tetrahedral four-cell packings that are not a planar junction at the pole are outside the planar cross he discusses and are not recoded." } } } rows { name { value: "label" } } rows { quad { p_iri { } o_literal { lex: "Claim test of thompson1917-ch07-05: refutes, confidence 0.45" } } } rows { name { value: "seeAlso" } } rows { prefix { value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/thompson-growth-form/thompson1917-ch07-05/" } } rows { name { value: "result.json" } } rows { quad { p_iri { } o_iri { prefix_id: 12 } } } rows { name { value: "wasAttributedTo" } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-claim-tester-grok-4-7" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 13 } } } rows { name { value: "admissibleDatasets" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "A public count, from embryos rather than from a simulation, of four-cell stages scored for a polar furrow versus a four-way junction, in animals whose blastomeres can sit in one plane in fluid contact. Embryos the source describes as having a persistent central opening are outside the claim\'s full-contact scope and do not enter the denominator. Login-walled image stacks are not used." } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { } o_literal { lex: "claim-test/0.1.0" } } } rows { name { value: "dataKind" } } rows { quad { p_iri { } o_literal { lex: "biological" } } } rows { name { value: "disconfirmingObservation" } } rows { quad { p_iri { } o_literal { lex: "At least 25 percent of full-contact four-cell embryos meet in a four-way cross." } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "One phoronid genus is not every animal egg the claim names." } } } rows { quad { o_literal { lex: "Openings, where the four cells do not touch, are outside the claim\'s full-contact scope and are not counted as crosses." } } } rows { quad { o_literal { lex: "Percentages were already rounded in the thesis, so a count can be off by about one embryo. The unrounded X total is stored beside the rounded one." } } } rows { quad { o_literal { lex: "The PDF md5 matches the repository record." } } } rows { quad { o_literal { lex: "The author notes that a very small opening is difficult to tell from an X-furrow, so some X calls may be openings." } } } rows { quad { o_literal { lex: "X-furrows in these tables come from fixed embryos. The 4D-recorded rows of P. pallida and P. muelleri show polar furrows or openings and no X-furrow." } } } rows { name { value: "expectedObservation" } } rows { quad { p_iri { } o_literal { lex: "Among four-cell embryos in full contact at the pole, a polar furrow is present in at least 90 percent and a four-way cross in at most 10 percent." } } } rows { name { value: "failCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered (refutes). n_in_scope >= 20 and the X-furrow fraction >= 0.25. If n_in_scope >= 20 but neither the support rule nor the refute rule holds, the verdict is mixed. If a scoring table is found but n_in_scope < 20, the verdict is inconclusive with reason underpowered. If the public text does not yield machine-readable counts of polar furrows and four-way junctions, the verdict is inconclusive with reason data-unavailable. Figures are not scored by eye." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.45" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "thompson1917-ch07-05--claim-test--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 14 } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "refutes" } } } rows { name { value: "hypothesis" } } rows { quad { p_iri { } o_literal { lex: "At the four-cell stage, embryos whose blastomeres are in full contact at the pole show a polar furrow (a short contact between one pair of opposite cells) and do not meet four-at-a-point in a stable cross." } } } rows { name { value: "inferenceMethod" } } rows { quad { p_iri { } o_literal { lex: "Pooled fraction of polar furrows and of four-way junctions among full-contact embryos, with the thresholds in pass_criterion and fail_criterion, plus a per-species split that forces mixed when species with n >= 10 disagree across those thresholds." } } } rows { name { value: "passCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered (supports). From embryo counts scored by the source as polar furrow or as a four-way junction (X-furrow / simple cross), with a central opening or gap treated as not in full contact and excluded from the denominator: n_in_scope >= 20, the polar-furrow fraction >= 0.90, and the X-furrow fraction <= 0.10. 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