@prefix this: . @prefix sub: . @prefix np: . @prefix rdf: . @prefix prov: . @prefix npx: . @prefix dc: . @prefix xsd: . sub:Head { this: a np:Nanopublication; np:hasAssertion sub:assertion; np:hasProvenance sub:provenance; np:hasPublicationInfo sub:pubinfo . } sub:assertion { a prov:SoftwareAgent; "delphisci dataset-resolvability assessor (Gemini 4 Argon)"; prov:actedOnBehalfOf ; . a ; dc:description "The computational portion of the claim—that a physiological human type I tropocollagen sequence deforms inhomogeneously under tension—can be re-evaluated by steered MD using public sequences and structural models. However, direct experimental data resolving sub-molecular strain profiles along single tropocollagen molecules are scarce, and fibril-level X-ray diffraction only resolves coarse gap-versus-overlap strain partitioning rather than individual sequence motifs."; dc:subject ; "Proposed test with existing data: Simulate uniaxial stretching of a multi-motif human type I tropocollagen segment in open MD software (or analyze residue-level crystallographic B-factors and D-band gap/overlap X-ray diffraction strain profiles) and test whether local axial strain variance along the sequence is significantly greater than that of a uniform-motif control."; "Gemini 4 Argon on buehler-2009-tropocollagen-sequencing-02: partially-resolvable, resolvability 0.62"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0"; "Experimental single-molecule stretching (optical tweezers or AFM) measures end-to-end extension rather than residue-by-residue local strain along a single tropocollagen molecule.", "Extrapolating single-molecule strain inhomogeneity to stress concentrations inside packed collagen fibrils is confounded by intermolecular cross-linking and gap/overlap packing."; "0.76"^^xsd:double; , , ; "0.617"^^xsd:double; "partially-resolvable" . a ; dc:isPartOf ; dc:subject ; "Analysis feasibility of buehler-2009-tropocollagen-sequencing-02 by Gemini 4 Argon: 0.68"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/analysis-feasibility"; "0.68"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Data adequacy of buehler-2009-tropocollagen-sequencing-02 by Gemini 4 Argon: 0.48"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/data-adequacy"; "0.48"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Data existence of buehler-2009-tropocollagen-sequencing-02 by Gemini 4 Argon: 0.58"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/data-existence"; "0.58"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Discriminating power of buehler-2009-tropocollagen-sequencing-02 by Gemini 4 Argon: 0.62"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/discriminating-power"; "0.62"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Operationalizability of buehler-2009-tropocollagen-sequencing-02 by Gemini 4 Argon: 0.75"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/operationalizability"; "0.75"^^xsd:double . , , , , , . a ; dc:description "In situ fibrillar collagen diffraction models (such as 3HR2) and high-resolution collagen peptide structures for mapping sequence regions to local structural compliance"; "Candidate dataset: RCSB Protein Data Bank"; prov:wasDerivedFrom . a ; dc:description "Full-length human COL1A1 and COL1A2 amino acid sequences needed to build the physiological segment"; "Candidate dataset: UniProt Knowledgebase"; prov:wasDerivedFrom . a ; dc:description "Open molecular dynamics engine for steered pulling of extended tropocollagen segments to measure local axial strain profiles"; "Candidate dataset: NAMD"; prov:wasDerivedFrom . a ; dc:identifier "gemini-4-argon-medium"; "Gemini 4 Argon" . } sub:provenance { sub:assertion prov:wasAttributedTo ; prov:wasDerivedFrom , ; prov:wasGeneratedBy sub:assessment . sub:assessment a prov:Activity; prov:qualifiedAssociation sub:assessmentPlan; prov:wasAssociatedWith . sub:assessmentPlan prov:hadPlan . } sub:pubinfo { "buehler-protein-materials" . this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime; dc:creator ; dc:license ; npx:hasNanopubType ; npx:introduces ; "Gemini 4 Argon on buehler-2009-tropocollagen-sequencing-02: partially-resolvable, resolvability 0.62"; . sub:sig npx:hasAlgorithm "RSA"; npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB"; npx:hasSignature "moGO6/0qc+LygvQKSPiIyudzLBBKatBaMnieuNFeVyRUp6DYMiS1byAQFBbRhD9u0CcVoLYvx0A8EJd+cqSQjLykx+f6aLj54ymuGZ2bnSX0v00DSOels6hA4XLXMIH0l8b+RRB1fQxS0wlHpGilEl1dK9m0XR7GeXjC1Ci0HqzdYqQZqUMMtE9LGuKxSeAFuUtqmodNAYSF3+Sgh59kUvP7JaCTV4bPF6YSdiPzOEegr4thKpx1cMwuvcxPf03cPwWLOP6n/FpxLn6RT7AWQ7QKV5xxKC5pH/Qdykw4D4HrfbPM7xuWSz40snleaYZ6LHHOdXxp6aqwgVGkUF3WNQ=="; npx:hasSignatureTarget this:; npx:signedBy . }