rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/np/" } } rows { name { value: "RAIbLrpMhtnC67D8CkXMINeeezvOdnNGTpuqzB9OFTjHo" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/np/RAIbLrpMhtnC67D8CkXMINeeezvOdnNGTpuqzB9OFTjHo/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { namespace { name: "rdf" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dc" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 3 } } } rows { prefix { value: "https://w3id.org/delphi/resource/assessment/" } } rows { name { value: "aristotle-ga05-05--claim-test" } } rows { name { value: "description" } } rows { quad { s_iri { prefix_id: 9 } p_iri { prefix_id: 7 } o_literal { lex: "analysis.py matched AnAge and PanTHERIA column names to heterochromia, iris and eye colour, and searched the FishBase manuals for the same patterns. No column matched, and no nearby coat or pelage column was present. No count of iris-colour classes or of heterochromic individuals was computed." } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "Assessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "Measured: 0 columns matching the pre-registered variable (n = 86). Interpretation: The same passage says most non-human kinds have one eye colour (cattle dark, sheep pale, goats mostly yellow) while humans have many, and then names the horse as the non-human with the greatest variety and as heteroglaucous. Heteroglaucous is read as the two eyes differing in colour, which is what the next sentences in the source call heteroglaucia (Nature concocts the liquid in one eye and not the other). Variety is a count of classes with a denominator of species that were actually scored, not a recollection of breed lists." } } } rows { name { value: "label" } } rows { quad { p_iri { } o_literal { lex: "Claim test of aristotle-ga05-05: inconclusive, confidence 0.88" } } } rows { name { value: "seeAlso" } } rows { prefix { value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga05-05/" } } rows { name { value: "result.json" } } rows { quad { p_iri { } o_iri { prefix_id: 12 } } } rows { name { value: "wasAttributedTo" } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-claim-tester-grok-4-7" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 13 } } } rows { name { value: "admissibleDatasets" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "A public individual- or species-level table from AnAge, FishBase, PanTHERIA, AVONET, GBIF, NCBI, WoRMS, PBDB, or a checksummed paper supplement, with iris colour or an explicit heterochromia field and a species name, at least 20 scored individuals for the horse and for each comparison species that enters the ranking. Licence stated. A breed-standard essay and Wikipedia are not admissible." } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { } o_literal { lex: "claim-test/0.1.0" } } } rows { name { value: "dataKind" } } rows { quad { p_iri { } o_literal { lex: "none" } } } rows { name { value: "disconfirmingObservation" } } rows { quad { p_iri { } o_literal { lex: "Another non-human species matches or exceeds the horse\'s class count, or a non-horse non-human species has heterochromia, or no horse has it. Missing columns do not disconfirm." } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "A species-level life-history table cannot supply the required denominator of at least 20 scored individuals." } } } rows { quad { o_literal { lex: "AVONET was left undownloaded. The pre-registered fail criterion already says its plumage and bill measurements are not iris colour." } } } rows { quad { o_literal { lex: "Clauses on variety, horse heterochromia and heterochromia in other species are all unscored." } } } rows { name { value: "expectedObservation" } } rows { quad { p_iri { } o_literal { lex: "Equus caballus has strictly more iris-colour classes than every other non-human species with at least 20 scored individuals; at least one horse is heterochromic; at least one human is heterochromic; no other species with at least 20 scored individuals is." } } } rows { name { value: "failCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered. V fails on a tie or if any other non-human species has as many or more classes. H fails if no scored horse is heterochromic at n >= 20. O fails if any non-horse non-human species with n >= 20 has a heterochromia count above 0, or if humans have a count of 0 at n >= 20. All three failing refutes the claim. One or two failing, with the others passing, is mixed. If the eye-colour column or the heterochromia column is absent, or fewer than 5 comparison species reach n >= 20, the verdict is inconclusive with reason data-unavailable or underpowered respectively. Coat colour, a single \'eye colour of the species\' with no individual counts, and AVONET plumage or bill measurements are not the named variables." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.88" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "aristotle-ga05-05--claim-test--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 14 } } } rows { name { value: "aristotle-ga05-05--claim-test--dataset-2" } } rows { quad { o_iri { } } } rows { name { value: "aristotle-ga05-05--claim-test--dataset-3" } } rows { quad { o_iri { } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "inconclusive" } } } rows { name { value: "hypothesis" } } rows { quad { p_iri { } o_literal { lex: "If, among animals other than man, the horse has the greatest variety of eye colour, and some horses have two differently coloured eyes while no other non-human animal does and man sometimes does, then a species-level eye-colour table will show the horse with strictly more iris-colour classes than every other non-human species, at least one heterochromic horse, heterochromia in humans, and heterochromia in no other species." } } } rows { name { value: "inferenceMethod" } } rows { quad { p_iri { } o_literal { lex: "Three clauses. Variety is a strict maximum of class counts; the denominator is the number of non-human species with at least 20 scored individuals (minimum 5). Heterochromia is a count of individuals whose record uses one of the pre-registered tokens or an explicit two-eye code. Support requires all three clauses. All three failing refutes. A split is mixed. Absent columns are data-unavailable." } } } rows { name { value: "passCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered. Full quote used: \'Of the other animals the horse has the greatest variety of colour in the eye, for some of them are actually heteroglaucous; this phenomenon is not to be seen in any of the other animals, but man is sometimes heteroglaucous.\' Variety = number of distinct iris-colour classes in the table\'s own categories (or distinct case-folded free-text values if that is the only colour field), counted only for species with at least 20 individuals scored. Clause V passes if Equus caballus has a strictly greater class count than every other non-human species with n >= 20, and at least 5 such other species exist. Clause H passes if at least one horse is scored heterochromic (two eyes different) among at least 20 horses scored for that trait. Clause O passes if the heterochromia count is 0 for every non-horse species with at least 20 individuals scored, humans have a count of at least 1, and at least 5 non-horse non-human species are scored. The claim is supported only if V, H and O all pass. Heterochromia tokens, fixed now: heterochromia, heterochromia iridis, heterochromia iridum, heteroglaucous, odd-eyed, odd eyed, wall-eye, wall eye. A single iris colour is not heterochromia." } } } rows { name { value: "preregistered" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#boolean" } } rows { quad { p_iri { } o_literal { lex: "false" datatype: 2 } } } rows { prefix { value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "aristotle-ga05-05" } } rows { name { value: "hasAssessment" } } rows { quad { s_iri { prefix_id: 15 } p_iri { prefix_id: 10 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { s_iri { prefix_id: 14 name_id: 30 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "Column names checked against the pre-registered variable" } } } rows { name { value: "license" } } rows { quad { p_iri { name_id: 40 } o_literal { lex: "CC BY 3.0. The fetched page https://genomics.senescence.info/legal.html says this work is licensed under a Creative Commons Attribution 3.0 Unported License, that the data sheets, including the observations in AnAge, are copyrighted, and that most content in HAGR is in the public domain." } } } rows { name { value: "EvidenceItem" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 41 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: AnAge, the Animal Ageing and Longevity Database" } } } rows { name { value: "atLocation" } } rows { prefix { value: "https://genomics.senescence.info/" } } rows { name { value: "legal.html" } } rows { quad { p_iri { prefix_id: 5 name_id: 42 } o_iri { prefix_id: 16 } } } rows { prefix { id: 6 value: "https://genomics.senescence.info/species/" } } rows { quad { o_iri { prefix_id: 6 name_id: 2 } } } rows { name { value: "dataset.zip" } } rows { quad { o_iri { name_id: 44 } } } rows { name { value: "wasDerivedFrom" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 6 name_id: 2 } } } rows { name { value: "hasChecksum" } } rows { quad { p_iri { prefix_id: 10 name_id: 46 } o_literal { lex: "sha256:708d25e725b8cb3625e0a5c03062bbb044985bea283af2d14433739dea9f8690" } } } rows { quad { o_literal { lex: "sha256:833190daa11a177ef557c70c70a746eab797303f775e168f64ad1ca72f623d05" } } } rows { quad { o_literal { lex: "sha256:e3ddb66e32e973a79932859ba53013e8f60d957c6ec01c6eb573e3ea3018d630" } } } rows { quad { s_iri { prefix_id: 14 name_id: 31 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "Column names checked against the pre-registered variable" } } } rows { quad { p_iri { name_id: 40 } o_literal { lex: "Not stated. 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