https://w3id.org/np/RAECOXoIYIl-ioiTtWfeuBruru5dPyce_RFCOwyytE2Jo
.trig | .trig.txt | .jelly | .jelly.txt | .jsonld | .jsonld.txt | .nq | .nq.txt | .xml | .xml.txt
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np:hasAssertion sub:assertion;
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sub:assertion {
<https://w3id.org/delphi/resource/assessment/levin-2023-goals-06--claim-test> a <https://w3id.org/delphi/ontology/Assessment>;
dc:description "analysis.py downloaded the seven source files at commit bced77dd90e6a5c67bf7a557610b19ee995db729 and the figshare docx, recorded byte size and SHA-256, and searched the docx for a numeric table or a numeric file. The archive contains four images and a caption document with zero Word tables. It then attempted to import MultiNEAT, which raised ModuleNotFoundError. No cell-state trajectory was scored. The model was not re-integrated, and the paper's reported percentages were not copied into measured.";
<http://www.w3.org/2000/01/rdf-schema#comment> "Measured: null French-flag accuracy at step 90 with stress clamped at 0, percent (n = 0, not measured). Interpretation: Simulation-result claim. The paper says that with stress forced to 0, the tissue reached only 82.8 percent of the target at 90 steps and the red stripe died at 99 steps, whereas with stress available it reached 95.1 percent at 90 steps. Those two percentages are the bar. The quote is: \"These experiments reveal that, in the absence of stress, anatomical homeostasis is not reached nor maintained during the lifetime of the cells.\" Red-stripe death by step 99 is recorded if the matrix contains it and does not replace the accuracy bar. A passing recomputation shows that this program produced those two figures. It does not show that an anxiolytic does this to cells.";
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of levin-2023-goals-06: inconclusive, confidence 0.9";
<http://www.w3.org/2000/01/rdf-schema#seeAlso> <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/levin-papers/levin-2023-goals-06/result.json>;
prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
<https://w3id.org/delphi/ontology/admissibleDatasets> "Numeric cell-state trajectories of the same evolved tissue with stress intact and with stress clamped at 0, from the authors' code or a deposited table. A figure image and the sentence that states 82.8 and 95.1 are not admissible as the measurement.";
<https://w3id.org/delphi/ontology/assessmentType> "claim-test/0.1.0";
<https://w3id.org/delphi/ontology/dataKind> "none";
<https://w3id.org/delphi/ontology/disconfirmingObservation> "Clamping stress at 0 does not lower step-90 accuracy, or the clamped run is still above 90 percent.";
<https://w3id.org/delphi/ontology/evidenceAgainst> "Scoring the model requires MultiNEAT, Mesa and OpenCV, which are outside the standard tooling for these tests. Importing MultiNEAT failed.",
"The committed run.py sets nb_gens = 2. The paper states 250 generations and a population of 350. That evolution was not run.",
"The figshare supplement is three figure images (energy initialization, perturbation size, random initialization) and their captions.",
"The source files were fetched. They do not contain an evolved genome or a cell-state matrix, so the pre-registered accuracy was not computed.",
"This record does not show whether the program forms a French flag, and it does not show that cells do this.";
<https://w3id.org/delphi/ontology/expectedObservation> "At step 90, accuracy with stress clamped at 0 is within 1 percentage point of 82.8, and accuracy with stress left intact is within 1 percentage point of 95.1.";
<https://w3id.org/delphi/ontology/failCriterion> "Pre-registered: refutes if the forced-zero accuracy at step 90 is greater than or equal to the intact accuracy, or if the forced-zero accuracy is > 90. Mixed if forced-zero accuracy is lower than intact accuracy but the pair is not within 1.0 percentage point of (82.8, 95.1). If the authors' code cannot be executed and no numeric cell-state matrix for the two arms can be fetched, the verdict is inconclusive with reason data-unavailable. The paper's 82.8 and 95.1 are the bar, not the measurement.";
<https://w3id.org/delphi/ontology/hasConfidence> "0.9"^^xsd:double;
<https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/levin-2023-goals-06--claim-test--dataset-1>,
<https://w3id.org/delphi/resource/evidence/levin-2023-goals-06--claim-test--dataset-2>,
<https://w3id.org/delphi/resource/evidence/levin-2023-goals-06--claim-test--dataset-3>;
<https://w3id.org/delphi/ontology/hasVerdict> "inconclusive";
<https://w3id.org/delphi/ontology/hypothesis> "In the evolved tissue that uses stress as an instructive signal, forcing stress to zero for the whole run lowers French-flag accuracy at step 90 from 95.1 percent to 82.8 percent.";
<https://w3id.org/delphi/ontology/inferenceMethod> "Two accuracies at step 90. Pass requires both to fall within 1.0 percentage point of the locked pair and the clamped arm to be lower. Refute if the clamp does not reduce accuracy or leaves it above 90.";
<https://w3id.org/delphi/ontology/passCriterion> "Pre-registered bar, locked before opening the supplementary file and before any developmental run: the two figures in the claim, 82.8 and 95.1. Supports only if a recomputed pair (stress forced to 0, stress intact) of French-flag accuracies at step 90 is within 1.0 percentage point of (82.8, 95.1) and the forced-zero accuracy is strictly lower. Accuracy is 100 times the fraction of cells in the target state. The same tissue is used for both arms. Forcing stress to zero means the stress value used by the cells is clamped at 0 at every step.";
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dc:description "authors' released model; nb_gens in run.py is 2 and no evolved genome is included. Not executed. The paper states 250 generations and population 350.";
dc:license "";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Pio-Lopez and Levin neural cellular automaton source, ES-HyperNEAT French-flag experiment";
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<https://w3id.org/delphi/resource/evidence/levin-2023-goals-06--claim-test--dataset-2>
a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "checked for a deposited cell-state or stress matrix; none present";
dc:license "";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Electronic supplementary material for Interface Focus 2023 rsfs.2022.0072";
prov:atLocation <https://ndownloader.figshare.com/files/39538311>;
prov:wasDerivedFrom <https://doi.org/10.6084/m9.figshare.c.6463335>;
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a <https://w3id.org/delphi/ontology/EvidenceItem>;
dc:description "claim text and the stated experimental parameters; not used as the measurement";
dc:license "CC BY";
<http://www.w3.org/2000/01/rdf-schema#label> "Dataset: Pio-Lopez L, Bischof J, LaPalme JV, Levin M (2023) The scaling of goals from cellular to anatomical homeostasis";
prov:wasDerivedFrom <https://doi.org/10.1098/rsfs.2022.0072> .
}
sub:provenance {
<https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7> a prov:SoftwareAgent;
<http://www.w3.org/2000/01/rdf-schema#label> "delphisci claim tester (grok-4.7; cursor/levin-competency-goals-363e)";
prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
<https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/grok-4-7> .
<https://w3id.org/delphi/resource/model/grok-4-7> a <https://w3id.org/delphi/ontology/LanguageModel>;
dc:identifier "grok-4.7" .
sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7>;
prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/levin-papers/levin-2023-goals-06/result.json>;
prov:wasGeneratedBy sub:test .
sub:plan prov:hadPlan <https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md> .
sub:test a prov:Activity;
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this: dc:created "2026-11-08T16:24:31.882Z"^^xsd:dateTime;
dc:creator <https://orcid.org/0009-0007-4948-9192>;
dc:license <https://creativecommons.org/licenses/by/4.0/>;
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npx:introduces <https://w3id.org/delphi/resource/assessment/levin-2023-goals-06--claim-test>;
<http://www.w3.org/2000/01/rdf-schema#label> "Claim test of levin-2023-goals-06: inconclusive, confidence 0.9";
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