https://w3id.org/np/RADvea45F7hKquF25Luks8CiNs_Q5XO5048qfiTGj--4c/Head https://w3id.org/np/RADvea45F7hKquF25Luks8CiNs_Q5XO5048qfiTGj--4c http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RADvea45F7hKquF25Luks8CiNs_Q5XO5048qfiTGj--4c/assertion https://w3id.org/np/RADvea45F7hKquF25Luks8CiNs_Q5XO5048qfiTGj--4c http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RADvea45F7hKquF25Luks8CiNs_Q5XO5048qfiTGj--4c/provenance https://w3id.org/np/RADvea45F7hKquF25Luks8CiNs_Q5XO5048qfiTGj--4c http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RADvea45F7hKquF25Luks8CiNs_Q5XO5048qfiTGj--4c/pubinfo https://w3id.org/np/RADvea45F7hKquF25Luks8CiNs_Q5XO5048qfiTGj--4c http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RADvea45F7hKquF25Luks8CiNs_Q5XO5048qfiTGj--4c/assertion https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test http://purl.org/dc/terms/description Cells in each image were segmented with Cellpose CPSAM v2 on the Nebius Scientific AI Platform (claim-sources/cell-geometry/segment.py; operation IDs and model checksum in claim-sources/cell-geometry/results/<image>/cellpose.json). claim-sources/cell-geometry/analyze.py closes inter-cell gaps, finds points where three or more cells meet, estimates each wall's direction from wall pixels 0.08-0.25 median cell diameters from the junction, counts neighbours of cells fully surrounded by segmented cells, and runs the same measurement on three synthetic tilings (hexagonal lattice, brick wall, random Voronoi) as calibration. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/Assessment https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test http://www.w3.org/2000/01/rdf-schema#comment Measured: 4 usable tissues with mean neighbour number within 0.1 of 6 (n = 5, one image per tissue). Interpretation: Thompson's example is coral corallites; this tests the same statement on plant and animal cell sheets. Euler's formula forces a mean of 6 for any large planar tiling with three cells at every vertex, so agreement confirms the claim without testing a biological mechanism. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test http://www.w3.org/2000/01/rdf-schema#label Claim test of thompson1917-ch07-10: supports, confidence 0.8 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test http://www.w3.org/2000/01/rdf-schema#seeAlso https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/thompson-growth-form/thompson1917-ch07-10/result.json https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-claim-tester-claude-opus-5-5 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/admissibleDatasets https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/assessmentType claim-test/0.1.0 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/dataKind biological https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/disconfirmingObservation Refutes if most usable tissues have a mean neighbour number more than 0.1 from 6. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/evidenceAgainst A mean of 6 is a topological necessity for trivalent planar tilings (Euler), reproduced by the random-Voronoi control; it is not evidence for any biological mechanism. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/evidenceAgainst Corallites, Thompson's own example, were not tested. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/evidenceAgainst Exploratory, not pre-registered: the images were segmented and inspected before the pass criterion was written. Treat the verdict as hypothesis-generating; a pre-registered replication on new images is needed before it counts as a test. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/evidenceAgainst Grass epidermis falls short of 6, most likely because unsegmented stomata and hairs hide some neighbours. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/expectedObservation Exploratory, not pre-registered: the images were segmented and inspected before the pass criterion was written. Treat the verdict as hypothesis-generating; a pre-registered replication on new images is needed before it counts as a test. A tissue conforms if its mean neighbour number is within 0.1 of 6. Supports if most usable tissues conform. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/failCriterion Refutes if most usable tissues have a mean neighbour number more than 0.1 from 6. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/hasConfidence 0.8 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-10--claim-test--dataset-1 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-10--claim-test--dataset-2 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-10--claim-test--dataset-3 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-10--claim-test--dataset-4 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/thompson1917-ch07-10--claim-test--dataset-5 https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/hasVerdict supports https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/hypothesis If close-packed cells of varying size are on average hexagonal, the mean number of neighbours of fully surrounded cells is 6. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/inferenceMethod Cells in each image were segmented with Cellpose CPSAM v2 on the Nebius Scientific AI Platform (claim-sources/cell-geometry/segment.py; operation IDs and model checksum in claim-sources/cell-geometry/results/<image>/cellpose.json). claim-sources/cell-geometry/analyze.py closes inter-cell gaps, finds points where three or more cells meet, estimates each wall's direction from wall pixels 0.08-0.25 median cell diameters from the junction, counts neighbours of cells fully surrounded by segmented cells, and runs the same measurement on three synthetic tilings (hexagonal lattice, brick wall, random Voronoi) as calibration. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/passCriterion Exploratory, not pre-registered: the images were segmented and inspected before the pass criterion was written. Treat the verdict as hypothesis-generating; a pre-registered replication on new images is needed before it counts as a test. A tissue conforms if its mean neighbour number is within 0.1 of 6. Supports if most usable tissues conform. https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/ontology/preregistered false https://w3id.org/delphi/resource/claim/thompson1917-ch07-10 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/thompson1917-ch07-10--claim-test https://w3id.org/delphi/resource/evidence/thompson1917-ch07-10--claim-test--dataset-1 http://purl.org/dc/terms/description Homo sapiens, corneal endothelium (alizarin red, in situ) https://w3id.org/delphi/resource/evidence/thompson1917-ch07-10--claim-test--dataset-1 http://purl.org/dc/terms/license CC BY-SA 4.0 https://w3id.org/delphi/resource/evidence/thompson1917-ch07-10--claim-test--dataset-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/EvidenceItem https://w3id.org/delphi/resource/evidence/thompson1917-ch07-10--claim-test--dataset-1 http://www.w3.org/2000/01/rdf-schema#label Dataset: Morphology of 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