https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/Head https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assertion https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/provenance https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/pubinfo https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assertion https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/ns/prov#SoftwareAgent https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium http://www.w3.org/2000/01/rdf-schema#label delphisci dataset-resolvability assessor (GPT-5.6 Sol) https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium http://www.w3.org/ns/prov#actedOnBehalfOf https://orcid.org/0009-0007-4948-9192 https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium https://w3id.org/delphi/ontology/usesModel https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt http://purl.org/dc/terms/description The sequence classes and secondary-structure outcomes are directly measurable with standard assignments. Public structures can test fragments and motifs, but they do not adequately cover the full MaSp1/MaSp2 assemblies or their disordered ensembles. Thus the qualitative partition is testable for a restricted subset, not at the scope claimed. https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt http://purl.org/dc/terms/subject https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LLMClaimAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt http://www.w3.org/2000/01/rdf-schema#comment Proposed test with existing data: Map residue regions in MaSp1 and MaSp2 structures to poly-alanine or glycine-rich repeats, assign secondary structure, and compare enrichment for beta sheets, 3_1-helical conformations, and beta turns. Strong region-specific enrichment supports the claim; substantial ordered beta-sheet formation in glycine-rich repeats or lack of beta-sheet enrichment in poly-alanine regions refutes it. https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt http://www.w3.org/2000/01/rdf-schema#label GPT-5.6 Sol on buehler-2010-silk-assemblies-01: partially-resolvable, resolvability 0.68 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/ontology/assessmentType dataset-resolvability/0.2.0 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/ontology/evidenceAgainst Full-length spider dragline silk assemblies are poorly represented by atomic structures. https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/ontology/evidenceAgainst Replica-exchange ensemble populations are not directly equivalent to deposited static structures. https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/ontology/evidenceAgainst Short fragments and crystallization conditions may bias secondary structure. https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/ontology/hasConfidence 0.82 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-01--gpt--dataset-1 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/ontology/hasScore 0.682 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/ontology/hasVerdict partially-resolvable https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility http://purl.org/dc/terms/isPartOf https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility http://purl.org/dc/terms/subject https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LLMClaimAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility http://www.w3.org/2000/01/rdf-schema#label Analysis feasibility of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.72 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility https://w3id.org/delphi/ontology/assessmentType dataset-resolvability/0.2.0/analysis-feasibility https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility https://w3id.org/delphi/ontology/hasScore 0.72 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy http://purl.org/dc/terms/isPartOf https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy http://purl.org/dc/terms/subject https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LLMClaimAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy http://www.w3.org/2000/01/rdf-schema#label Data adequacy of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.46 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy https://w3id.org/delphi/ontology/assessmentType dataset-resolvability/0.2.0/data-adequacy https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy https://w3id.org/delphi/ontology/hasScore 0.46 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence http://purl.org/dc/terms/isPartOf https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence http://purl.org/dc/terms/subject https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LLMClaimAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence http://www.w3.org/2000/01/rdf-schema#label Data existence of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.64 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence https://w3id.org/delphi/ontology/assessmentType dataset-resolvability/0.2.0/data-existence https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence https://w3id.org/delphi/ontology/hasScore 0.64 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power http://purl.org/dc/terms/isPartOf https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power http://purl.org/dc/terms/subject https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LLMClaimAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power http://www.w3.org/2000/01/rdf-schema#label Discriminating power of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.73 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power https://w3id.org/delphi/ontology/assessmentType dataset-resolvability/0.2.0/discriminating-power https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power https://w3id.org/delphi/ontology/hasScore 0.73 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability http://purl.org/dc/terms/isPartOf https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability http://purl.org/dc/terms/subject https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LLMClaimAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability http://www.w3.org/2000/01/rdf-schema#label Operationalizability of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.88 https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability https://w3id.org/delphi/ontology/assessmentType dataset-resolvability/0.2.0/operationalizability https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability https://w3id.org/delphi/ontology/hasScore 0.88 https://w3id.org/delphi/resource/claim/buehler-2010-silk-assemblies-01 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/delphi/resource/claim/buehler-2010-silk-assemblies-01 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility https://w3id.org/delphi/resource/claim/buehler-2010-silk-assemblies-01 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy https://w3id.org/delphi/resource/claim/buehler-2010-silk-assemblies-01 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence https://w3id.org/delphi/resource/claim/buehler-2010-silk-assemblies-01 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power https://w3id.org/delphi/resource/claim/buehler-2010-silk-assemblies-01 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-01--gpt--dataset-1 http://purl.org/dc/terms/description public experimental protein structures from which secondary structure can be assigned for available silk fragments https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-01--gpt--dataset-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/EvidenceItem https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-01--gpt--dataset-1 http://www.w3.org/2000/01/rdf-schema#label Candidate dataset: RCSB Protein Data Bank https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-01--gpt--dataset-1 http://www.w3.org/ns/prov#wasDerivedFrom https://www.rcsb.org/ https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium http://purl.org/dc/terms/identifier gpt-5.6-sol-medium https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/LanguageModel https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium http://www.w3.org/2000/01/rdf-schema#label GPT-5.6 Sol https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/provenance https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assertion http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assertion http://www.w3.org/ns/prov#wasDerivedFrom https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-3.json https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assertion http://www.w3.org/ns/prov#wasDerivedFrom https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0 https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assertion http://www.w3.org/ns/prov#wasGeneratedBy https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assessment https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assessment http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/ns/prov#Activity https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assessment http://www.w3.org/ns/prov#qualifiedAssociation https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assessmentPlan https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assessment http://www.w3.org/ns/prov#wasAssociatedWith https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/assessmentPlan http://www.w3.org/ns/prov#hadPlan https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/pubinfo https://w3id.org/delphi/resource/domain/buehler-protein-materials http://www.w3.org/2000/01/rdf-schema#label buehler-protein-materials https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://purl.org/dc/terms/created 2026-11-08T04:48:50.317Z https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://purl.org/dc/terms/creator https://orcid.org/0009-0007-4948-9192 https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://purl.org/dc/terms/license https://creativecommons.org/licenses/by/4.0/ https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://purl.org/nanopub/x/hasNanopubType https://w3id.org/delphi/ontology/LLMClaimAssessment https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://purl.org/nanopub/x/introduces https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE http://www.w3.org/2000/01/rdf-schema#label GPT-5.6 Sol on buehler-2010-silk-assemblies-01: partially-resolvable, resolvability 0.68 https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE https://w3id.org/delphi/ontology/domain https://w3id.org/delphi/resource/domain/buehler-protein-materials https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/sig http://purl.org/nanopub/x/hasAlgorithm RSA https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/sig http://purl.org/nanopub/x/hasPublicKey MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/sig http://purl.org/nanopub/x/hasSignature Q530avpVg8zqAa7RVYqMTMvm+B1tbkMdT1C1sUJY/udV4vtxAviW3mZ5U5En1wUTd8cN0iBxv0ojCx2OIkykrHpOQ3+ThYJXCdfNHhFn44DSaXLS/NcoJBhaLZelfcNQsDQlMzdsLcW37reeLjvHoXLX7Dvx0YmAN+dOelhmebQ9h6P77yhJRoEsyPUlIsJ0w/STEh++jDDtS98Tc1R+Ri01EGCUj5K0vwlP+pWcICjWHoK9LFIX+DcoH1AQPciCk7kpzh0/cLSEtNL9cKB7iiunUVAfUQ4r0R1dbyFOMh9xwX4wkQv+PjAEQpVBaGkuZBH8Q8EuONpoAP7s0rzOCA== https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/sig http://purl.org/nanopub/x/hasSignatureTarget https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/sig http://purl.org/nanopub/x/signedBy https://orcid.org/0009-0007-4948-9192