@prefix this: <https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE> .
@prefix sub: <https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>
    a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci dataset-resolvability assessor (GPT-5.6 Sol)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "The sequence classes and secondary-structure outcomes are directly measurable with standard assignments. Public structures can test fragments and motifs, but they do not adequately cover the full MaSp1/MaSp2 assemblies or their disordered ensembles. Thus the qualitative partition is testable for a restricted subset, not at the scope claimed.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Map residue regions in MaSp1 and MaSp2 structures to poly-alanine or glycine-rich repeats, assign secondary structure, and compare enrichment for beta sheets, 3_1-helical conformations, and beta turns. Strong region-specific enrichment supports the claim; substantial ordered beta-sheet formation in glycine-rich repeats or lack of beta-sheet enrichment in poly-alanine regions refutes it.";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol on buehler-2010-silk-assemblies-01: partially-resolvable, resolvability 0.68";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Full-length spider dragline silk assemblies are poorly represented by atomic structures.",
      "Replica-exchange ensemble populations are not directly equivalent to deposited static structures.",
      "Short fragments and crystallization conditions may bias secondary structure.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.82"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-01--gpt--dataset-1>;
    <https://w3id.org/delphi/ontology/hasScore> "0.682"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasVerdict> "partially-resolvable" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Analysis feasibility of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.72";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/analysis-feasibility";
    <https://w3id.org/delphi/ontology/hasScore> "0.72"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-adequacy>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data adequacy of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.46";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-adequacy";
    <https://w3id.org/delphi/ontology/hasScore> "0.46"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Data existence of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.64";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/data-existence";
    <https://w3id.org/delphi/ontology/hasScore> "0.64"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.73";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.73"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.88";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/operationalizability";
    <https://w3id.org/delphi/ontology/hasScore> "0.88"^^xsd:double .
  
  <https://w3id.org/delphi/resource/claim/buehler-2010-silk-assemblies-01> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--analysis-feasibility>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-adequacy>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--discriminating-power>,
      <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2010-silk-assemblies-01--gpt--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "public experimental protein structures from which secondary structure can be assigned for available silk fragments";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: RCSB Protein Data Bank";
    prov:wasDerivedFrom <https://www.rcsb.org/> .
  
  <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gpt-5.6-sol-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-3.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
  <https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2010-silk-assemblies-01--gpt>;
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol on buehler-2010-silk-assemblies-01: partially-resolvable, resolvability 0.68";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
  sub:sig npx:hasAlgorithm "RSA";
    npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB";
    npx:hasSignature "Q530avpVg8zqAa7RVYqMTMvm+B1tbkMdT1C1sUJY/udV4vtxAviW3mZ5U5En1wUTd8cN0iBxv0ojCx2OIkykrHpOQ3+ThYJXCdfNHhFn44DSaXLS/NcoJBhaLZelfcNQsDQlMzdsLcW37reeLjvHoXLX7Dvx0YmAN+dOelhmebQ9h6P77yhJRoEsyPUlIsJ0w/STEh++jDDtS98Tc1R+Ri01EGCUj5K0vwlP+pWcICjWHoK9LFIX+DcoH1AQPciCk7kpzh0/cLSEtNL9cKB7iiunUVAfUQ4r0R1dbyFOMh9xwX4wkQv+PjAEQpVBaGkuZBH8Q8EuONpoAP7s0rzOCA==";
    npx:hasSignatureTarget this:;
    npx:signedBy <https://orcid.org/0009-0007-4948-9192> .
}