rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/np/" } } rows { name { value: "RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/np/RACm4DkgihwyHAgVp15xSQko65VB87x-brpyVTej6QbBE/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { namespace { name: "rdf" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dc" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 3 } } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-resolvability-assessor-gpt-5.6-sol-medium" } } rows { name { value: "SoftwareAgent" } } rows { quad { s_iri { prefix_id: 9 } o_iri { prefix_id: 5 } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "label" } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "delphisci dataset-resolvability assessor (GPT-5.6 Sol)" } } } rows { name { value: "actedOnBehalfOf" } } rows { prefix { value: "https://orcid.org/" } } rows { name { value: "0009-0007-4948-9192" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 11 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "usesModel" } } rows { prefix { value: "https://w3id.org/delphi/resource/model/" } } rows { name { value: "gpt-5.6-sol-medium" } } rows { quad { p_iri { prefix_id: 12 } o_iri { prefix_id: 13 } } } rows { prefix { value: "https://w3id.org/delphi/resource/assessment/" } } rows { name { value: "buehler-2010-silk-assemblies-01--gpt" } } rows { name { value: "description" } } rows { quad { s_iri { prefix_id: 14 } p_iri { prefix_id: 7 } o_literal { lex: "The sequence classes and secondary-structure outcomes are directly measurable with standard assignments. Public structures can test fragments and motifs, but they do not adequately cover the full MaSp1/MaSp2 assemblies or their disordered ensembles. Thus the qualitative partition is testable for a restricted subset, not at the scope claimed." } } } rows { name { value: "subject" } } rows { prefix { value: "https://w3id.org/delphi/resource/concept/" } } rows { name { value: "dataset-resolvability-0.2.0" } } rows { quad { p_iri { } o_iri { prefix_id: 15 } } } rows { name { value: "LLMClaimAssessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "Proposed test with existing data: Map residue regions in MaSp1 and MaSp2 structures to poly-alanine or glycine-rich repeats, assign secondary structure, and compare enrichment for beta sheets, 3_1-helical conformations, and beta turns. Strong region-specific enrichment supports the claim; substantial ordered beta-sheet formation in glycine-rich repeats or lack of beta-sheet enrichment in poly-alanine regions refutes it." } } } rows { quad { p_iri { name_id: 14 } o_literal { lex: "GPT-5.6 Sol on buehler-2010-silk-assemblies-01: partially-resolvable, resolvability 0.68" } } } rows { name { value: "wasAttributedTo" } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0" } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "Full-length spider dragline silk assemblies are poorly represented by atomic structures." } } } rows { quad { o_literal { lex: "Replica-exchange ensemble populations are not directly equivalent to deposited static structures." } } } rows { quad { o_literal { lex: "Short fragments and crystallization conditions may bias secondary structure." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.82" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "buehler-2010-silk-assemblies-01--gpt--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 16 } } } rows { name { value: "hasScore" } } rows { quad { p_iri { prefix_id: 12 } o_literal { lex: "0.682" datatype: 1 } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { } o_literal { lex: "partially-resolvable" } } } rows { name { value: "buehler-2010-silk-assemblies-01--gpt--analysis-feasibility" } } rows { name { value: "isPartOf" } } rows { quad { s_iri { prefix_id: 14 } p_iri { prefix_id: 7 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-analysis-feasibility" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 35 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Analysis feasibility of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.72" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/analysis-feasibility" } } } rows { quad { p_iri { name_id: 31 } o_literal { lex: "0.72" datatype: 1 } } } rows { name { value: "buehler-2010-silk-assemblies-01--gpt--data-adequacy" } } rows { quad { s_iri { prefix_id: 14 name_id: 36 } p_iri { prefix_id: 7 name_id: 34 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-data-adequacy" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 37 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Data adequacy of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.46" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/data-adequacy" } } } rows { quad { p_iri { name_id: 31 } o_literal { lex: "0.46" datatype: 1 } } } rows { name { value: "buehler-2010-silk-assemblies-01--gpt--data-existence" } } rows { quad { s_iri { prefix_id: 14 name_id: 38 } p_iri { prefix_id: 7 name_id: 34 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-data-existence" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 39 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Data existence of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.64" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/data-existence" } } } rows { quad { p_iri { name_id: 31 } o_literal { lex: "0.64" datatype: 1 } } } rows { name { value: "buehler-2010-silk-assemblies-01--gpt--discriminating-power" } } rows { quad { s_iri { prefix_id: 14 name_id: 40 } p_iri { prefix_id: 7 name_id: 34 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-discriminating-power" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 41 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Discriminating power of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.73" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/discriminating-power" } } } rows { quad { p_iri { name_id: 31 } o_literal { lex: "0.73" datatype: 1 } } } rows { name { value: "buehler-2010-silk-assemblies-01--gpt--operationalizability" } } rows { quad { s_iri { prefix_id: 14 name_id: 42 } p_iri { prefix_id: 7 name_id: 34 } o_iri { prefix_id: 14 name_id: 19 } } } rows { name { value: "dataset-resolvability-0.2.0-operationalizability" } } rows { quad { p_iri { prefix_id: 7 name_id: 21 } o_iri { prefix_id: 15 name_id: 43 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 23 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Operationalizability of buehler-2010-silk-assemblies-01 by GPT-5.6 Sol: 0.88" } } } rows { quad { p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { p_iri { prefix_id: 12 name_id: 26 } o_literal { lex: "dataset-resolvability/0.2.0/operationalizability" } } } rows { quad { p_iri { name_id: 31 } o_literal { lex: "0.88" datatype: 1 } } } rows { prefix { id: 6 value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "buehler-2010-silk-assemblies-01" } } rows { name { value: "hasAssessment" } } rows { quad { s_iri { prefix_id: 6 name_id: 44 } p_iri { prefix_id: 12 } o_iri { prefix_id: 14 name_id: 19 } } } rows { quad { o_iri { name_id: 33 } } } rows { quad { o_iri { name_id: 36 } } } rows { quad { o_iri { name_id: 38 } } } rows { quad { o_iri { name_id: 40 } } } rows { quad { o_iri { name_id: 42 } } } rows { quad { s_iri { prefix_id: 16 name_id: 30 } p_iri { prefix_id: 7 name_id: 20 } o_literal { lex: "public experimental protein structures from which secondary structure can be assigned for available silk fragments" } } } rows { name { value: "EvidenceItem" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 46 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "Candidate dataset: RCSB Protein Data Bank" } } } rows { name { value: "wasDerivedFrom" } } rows { prefix { id: 8 value: "https://www.rcsb.org/" } } rows { quad { p_iri { prefix_id: 5 name_id: 47 } o_iri { prefix_id: 8 name_id: 2 } } } rows { name { value: "identifier" } } rows { quad { s_iri { prefix_id: 13 name_id: 18 } p_iri { prefix_id: 7 name_id: 48 } o_literal { lex: "gpt-5.6-sol-medium" } } } rows { name { value: "LanguageModel" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 12 name_id: 49 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "GPT-5.6 Sol" } } } rows { quad { s_iri { prefix_id: 2 name_id: 4 } p_iri { prefix_id: 5 name_id: 25 } o_iri { prefix_id: 9 name_id: 12 } g_iri { prefix_id: 2 name_id: 7 } } } rows { prefix { id: 1 value: "https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/" } } rows { name { value: "batch-3.json" } } rows { quad { p_iri { prefix_id: 5 name_id: 47 } o_iri { prefix_id: 1 name_id: 50 } } } rows { quad { o_iri { prefix_id: 15 name_id: 22 } } } rows { name { value: "wasGeneratedBy" } } rows { name { value: "assessment" } } rows { quad { p_iri { prefix_id: 5 name_id: 51 } o_iri { prefix_id: 2 } } } rows { name { value: "Activity" } } rows { quad { s_iri { name_id: 52 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 53 } } } rows { name { value: "qualifiedAssociation" } } rows { name { value: "assessmentPlan" } } rows { quad { p_iri { } o_iri { prefix_id: 2 } } } rows { name { value: "wasAssociatedWith" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 9 name_id: 12 } } } rows { name { value: "hadPlan" } } rows { prefix { id: 3 value: "https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/" } } rows { name { value: "README.md" } } rows { quad { s_iri { prefix_id: 2 name_id: 55 } p_iri { prefix_id: 5 name_id: 57 } o_iri { prefix_id: 3 } } } rows { prefix { id: 11 value: "https://w3id.org/delphi/resource/domain/" } } rows { name { value: "buehler-protein-materials" } } rows { quad { s_iri { prefix_id: 11 } p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "buehler-protein-materials" } g_iri { prefix_id: 2 name_id: 9 } } } rows { prefix { id: 6 value: "https://w3id.org/np/" } } rows { name { value: "created" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#dateTime" } } rows { quad { s_iri { prefix_id: 6 name_id: 1 } p_iri { prefix_id: 7 name_id: 60 } o_literal { lex: "2026-11-08T04:48:50.317Z" datatype: 2 } } } rows { name { value: "creator" } } rows { prefix { id: 14 value: "https://orcid.org/" } } rows { quad { p_iri { } o_iri { prefix_id: 14 name_id: 16 } } } rows { name { value: "license" } } rows { prefix { id: 16 value: "https://creativecommons.org/licenses/by/4.0/" } } rows { quad { p_iri { prefix_id: 7 name_id: 62 } o_iri { prefix_id: 16 name_id: 2 } } } rows { prefix { id: 8 value: "http://purl.org/nanopub/x/" } } rows { name { value: "hasNanopubType" } } rows { quad { p_iri { prefix_id: 8 name_id: 63 } o_iri { prefix_id: 12 name_id: 23 } } } rows { name { value: "introduces" } } rows { prefix { id: 13 value: "https://w3id.org/delphi/resource/assessment/" } } rows { quad { p_iri { prefix_id: 8 name_id: 64 } o_iri { prefix_id: 13 name_id: 19 } } } rows { quad { p_iri { prefix_id: 10 name_id: 14 } o_literal { lex: "GPT-5.6 Sol on buehler-2010-silk-assemblies-01: partially-resolvable, resolvability 0.68" } } } rows { name { value: "domain" } } rows { quad { p_iri { prefix_id: 12 name_id: 65 } o_iri { prefix_id: 11 name_id: 59 } } } rows { name { value: "sig" } } rows { name { value: "hasAlgorithm" } } rows { quad { s_iri { prefix_id: 2 name_id: 66 } p_iri { prefix_id: 8 } o_literal { lex: "RSA" } } } rows { name { value: "hasPublicKey" } } rows { quad { p_iri { } o_literal { lex: "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } } } rows { name { value: "hasSignature" } } rows { quad { p_iri { } o_literal { lex: "Q530avpVg8zqAa7RVYqMTMvm+B1tbkMdT1C1sUJY/udV4vtxAviW3mZ5U5En1wUTd8cN0iBxv0ojCx2OIkykrHpOQ3+ThYJXCdfNHhFn44DSaXLS/NcoJBhaLZelfcNQsDQlMzdsLcW37reeLjvHoXLX7Dvx0YmAN+dOelhmebQ9h6P77yhJRoEsyPUlIsJ0w/STEh++jDDtS98Tc1R+Ri01EGCUj5K0vwlP+pWcICjWHoK9LFIX+DcoH1AQPciCk7kpzh0/cLSEtNL9cKB7iiunUVAfUQ4r0R1dbyFOMh9xwX4wkQv+PjAEQpVBaGkuZBH8Q8EuONpoAP7s0rzOCA==" } } } rows { name { value: "hasSignatureTarget" } } rows { quad { p_iri { } o_iri { prefix_id: 6 name_id: 1 } } } rows { name { value: "signedBy" } } rows { quad { p_iri { prefix_id: 8 name_id: 71 } o_iri { prefix_id: 14 name_id: 16 } } }