[ { "@id": "https://w3id.org/np/RABpTXhv7R5AdRu8_YNZUgnwOYct5qSzVpmyDuwYoIcgw/provenance", "@graph": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7", "@type": [ "http://www.w3.org/ns/prov#SoftwareAgent" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "delphisci claim tester (Grok 4.7; cursor/aristotle-life-history-g-a908)" } ], "http://www.w3.org/ns/prov#actedOnBehalfOf": [ { "@id": "https://orcid.org/0009-0007-4948-9192" } ], "https://w3id.org/delphi/ontology/usesModel": [ { "@id": "https://w3id.org/delphi/resource/model/grok-4-7" } ] }, { "@id": "https://w3id.org/delphi/resource/model/grok-4-7", "http://purl.org/dc/terms/identifier": [ { "@value": "Grok 4.7" } ], "@type": [ "https://w3id.org/delphi/ontology/LanguageModel" ] }, { "@id": "https://w3id.org/np/RABpTXhv7R5AdRu8_YNZUgnwOYct5qSzVpmyDuwYoIcgw/assertion", "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha04-08/result.json" } ], "http://www.w3.org/ns/prov#wasGeneratedBy": [ { "@id": "https://w3id.org/np/RABpTXhv7R5AdRu8_YNZUgnwOYct5qSzVpmyDuwYoIcgw/test" } ] }, { "@id": "https://w3id.org/np/RABpTXhv7R5AdRu8_YNZUgnwOYct5qSzVpmyDuwYoIcgw/test", "@type": [ "http://www.w3.org/ns/prov#Activity" ], "http://www.w3.org/ns/prov#qualifiedAssociation": [ { "@id": "https://w3id.org/np/RABpTXhv7R5AdRu8_YNZUgnwOYct5qSzVpmyDuwYoIcgw/plan" } ], "http://www.w3.org/ns/prov#wasAssociatedWith": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ] }, { "@id": "https://w3id.org/np/RABpTXhv7R5AdRu8_YNZUgnwOYct5qSzVpmyDuwYoIcgw/plan", "http://www.w3.org/ns/prov#hadPlan": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/README.md" } ] } ] }, { "@id": "https://w3id.org/np/RABpTXhv7R5AdRu8_YNZUgnwOYct5qSzVpmyDuwYoIcgw/assertion", "@graph": [ { "@id": "https://w3id.org/delphi/resource/assessment/aristotle-ha04-08--claim-test", "http://purl.org/dc/terms/description": [ { "@value": "Each Europe PMC XML was split into sentences. Charonia or triton sentences were scored from PMC5519703: proboscis-bores-shell required a shell perforation named with the proboscis or radula; does-not-bore required the proboscis to penetrate or be inserted into an echinoderm with no shell-boring sentence. Muricid sentences were scored from the other three papers, and a sentence naming Stramonita haemastoma met the muricid rule. The claim passes only if both kinds are proboscis-bores-shell. Both kinds were scored and the trumpet-shell was not, so the conjunction refutes. The denominator is the two named kinds." } ], "@type": [ "https://w3id.org/delphi/ontology/Assessment" ], "http://www.w3.org/2000/01/rdf-schema#comment": [ { "@value": "Measured: 0.5 fraction of the two named kinds (purple murex, trumpet-shell) scored proboscis-bores-shell (n = 2, kinds scored: 2 of 2). Interpretation: The sentence is about two testaceans, the purple murex and the ceryx (trumpet-shell), and it says their proboscis bores through the shells of the shellfish they eat. Purple murex is scored as Muricidae. Trumpet-shell is scored as Charonia, the giant triton, not as every tonnoidean. Boring a hole in a shell is the observation. Eating an echinoderm by pushing the proboscis into its body is not boring a shell. The accessory boring organ, when a paper places it in the foot, is not the proboscis." } ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Claim test of aristotle-ha04-08: refutes, confidence 0.73" } ], "http://www.w3.org/2000/01/rdf-schema#seeAlso": [ { "@id": "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha04-08/result.json" } ], "http://www.w3.org/ns/prov#wasAttributedTo": [ { "@id": "https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7" } ], "https://w3id.org/delphi/ontology/admissibleDatasets": [ { "@value": "Checksummed papers that report feeding or shell-drilling observations for Muricidae and for Charonia. A diet list that does not say whether a shell was perforated is not enough. FishBase is fishes and is not admissible." } ], "https://w3id.org/delphi/ontology/assessmentType": [ { "@value": "claim-test/0.1.0" } ], "https://w3id.org/delphi/ontology/dataKind": [ { "@value": "biological" } ], "https://w3id.org/delphi/ontology/disconfirmingObservation": [ { "@value": "Either kind is described as not perforating shells, or as perforating them with an organ other than the proboscis." } ], "https://w3id.org/delphi/ontology/evidenceAgainst": [ { "@value": "Mondal et al. 2021 count drillholes and say some could be muricid, but they expect mostly naticid holes and do not name a proboscis. That paper is not the muricid sentence that was scored." }, { "@value": "The Cassidae sentence in the triton paper, about boring a sea-urchin body wall with a radula and proboscis, is a different family and was not scored as Charonia." }, { "@value": "The purple murex is scored from Stramonita haemastoma, a muricid, not from a species named Murex. The sentence says the accessory boring organ and the radula drill the bivalve shell and the proboscis is inserted into the hole. That meets the pre-registered muricid rule because the radula takes part. It is one species standing for the kind Aristotle names." }, { "@value": "The trumpet-shell is Charonia. PMC5519703 records the proboscis penetrating a crown-of-thorns starfish. No sentence in that paper says Charonia bores a mollusc shell. One of two kinds fails, so the conjunction refutes." }, { "@value": "n is the two named kinds, not a count of individual snails." } ], "https://w3id.org/delphi/ontology/expectedObservation": [ { "@value": "A checksummed account of Muricidae and a checksummed account of Charonia each say that the animal perforates a prey shell and that the proboscis takes part." } ], "https://w3id.org/delphi/ontology/failCriterion": [ { "@value": "Refutes if both kinds are scored and at least one is not proboscis-bores-shell. A kind that the same papers describe as feeding by inserting the proboscis into soft tissue without perforating a shell is does-not-bore. A kind described as drilling shells with an accessory boring organ or the foot, and not with the proboscis, is bores-not-proboscis. A kind described as drilling shells with the organ unnamed is bores-organ-unnamed. All three are not proboscis-bores-shell. Inconclusive, reason underpowered, if exactly one kind is scored. Inconclusive, reason data-unavailable, if neither paper states a feeding or drilling act for either kind. Inconclusive, reason not-operationalizable, if the papers name the animals and do not say whether a shell is perforated." } ], "https://w3id.org/delphi/ontology/hasConfidence": [ { "@value": "0.73", "@type": "http://www.w3.org/2001/XMLSchema#double" } ], "https://w3id.org/delphi/ontology/hasEvidence": [ { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha04-08--claim-test--dataset-1" }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha04-08--claim-test--dataset-2" }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha04-08--claim-test--dataset-3" }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha04-08--claim-test--dataset-4" } ], "https://w3id.org/delphi/ontology/hasVerdict": [ { "@value": "refutes" } ], "https://w3id.org/delphi/ontology/hypothesis": [ { "@value": "Both the purple murex (Muricidae) and the trumpet-shell (Charonia) perforate the shells of shelled prey with the proboscis." } ], "https://w3id.org/delphi/ontology/inferenceMethod": [ { "@value": "Two kinds, scored independently as proboscis-bores-shell or not. The claim passes only if both are. It refutes if both are scored and either is not. One scored kind is underpowered." } ], "https://w3id.org/delphi/ontology/passCriterion": [ { "@value": "Each named kind is scored from a checksummed paper, separately. A kind is proboscis-bores-shell only if a sentence names that kind (Muricidae, muricid, murex or Stramonita for the purple murex; Charonia or triton for the trumpet-shell) together with a shell perforation (bore, drill or borehole) and names the proboscis or the radula it carries as taking part. The claim passes only if both kinds are proboscis-bores-shell. The denominator is the two named kinds." } ], "https://w3id.org/delphi/ontology/preregistered": [ { "@value": "false", "@type": "http://www.w3.org/2001/XMLSchema#boolean" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha04-08--claim-test--dataset-1", "http://purl.org/dc/terms/description": [ { "@value": "feeding of Charonia: proboscis penetration of a starfish, not a shell" } ], "http://purl.org/dc/terms/license": [ { "@value": "http://creativecommons.org/licenses/by/4.0/" } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Dataset: Bose et al. 2017, giant triton salivary gland and feeding on crown-of-thorns starfish" } ], "http://www.w3.org/ns/prov#atLocation": [ { "@id": "https://www.ebi.ac.uk/europepmc/webservices/rest/PMC5519703/fullTextXML" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://doi.org/10.1038/s41598-017-05974-x" } ], "https://w3id.org/delphi/ontology/hasChecksum": [ { "@value": "sha256:3bc7131fa48bc580d571f664b68e942e6c8ae75db4c85f88676e9e47b5196730" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha04-08--claim-test--dataset-2", "http://purl.org/dc/terms/description": [ { "@value": "drillhole census; fetched because it names muricid drilling. It did not supply the muricid sentence that was scored" } ], "http://purl.org/dc/terms/license": [ { "@value": "https://creativecommons.org/licenses/by/4.0/" } ], "@type": [ "https://w3id.org/delphi/ontology/EvidenceItem" ], "http://www.w3.org/2000/01/rdf-schema#label": [ { "@value": "Dataset: Mondal et al. 2021, drillholes on the eastern Indian coast" } ], "http://www.w3.org/ns/prov#atLocation": [ { "@id": "https://www.ebi.ac.uk/europepmc/webservices/rest/PMC8389373/fullTextXML" } ], "http://www.w3.org/ns/prov#wasDerivedFrom": [ { "@id": "https://doi.org/10.1371/journal.pone.0256685" } ], "https://w3id.org/delphi/ontology/hasChecksum": [ { "@value": "sha256:eadaf3e2f8a1e5e29c44dc1c7f91c1d1f4c68fed07032007b6b0ca33de52b5c1" } ] }, { "@id": "https://w3id.org/delphi/resource/evidence/aristotle-ha04-08--claim-test--dataset-3", "http://purl.org/dc/terms/description": [ { "@value": "mentions muricids that drill; the scored muricid sentence is in the Stramonita paper" } ], 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