@prefix this: <https://w3id.org/np/RAAnnXqXmD1hA2k4bP4PquxBmO7QPq_OPIqJTqwDI7yWM> .
@prefix sub: <https://w3id.org/np/RAAnnXqXmD1hA2k4bP4PquxBmO7QPq_OPIqJTqwDI7yWM/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
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    dc:description "The comparison maps cleanly to standard mechanical quantities. Public structures and published mechanical measurements can test parts of it, but structural records alone do not separate entropic from energetic deformation, and matched measurements across assembly states are limited.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Estimate persistence length or bending stiffness and the entropic fraction of the force-extension response for isolated tropocollagen and fibrillar assemblies under matched conditions. The claim is supported by a substantially larger stiffness and smaller entropic contribution in fibrils, and refuted if assembly leaves those quantities unchanged or increases the entropic contribution.";
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Hydration, cross-linking, and fibril composition confound the effect of assembly.",
      "Matched single-molecule and fibril bending measurements are likely scattered across publications rather than one open dataset.";
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  <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gpt--data-existence>
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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  <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gpt--operationalizability>
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    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
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  <https://w3id.org/delphi/resource/claim/buehler-2007-tropocollagen-entropic-03> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gpt>,
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      <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gpt--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gpt--discriminating-power>,
      <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gpt--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2007-tropocollagen-entropic-03--gpt--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "public collagen structures can constrain molecular and fibrillar geometry, but do not directly supply matched bending measurements";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: RCSB Protein Data Bank";
    prov:wasDerivedFrom <https://www.rcsb.org/> .
  
  <https://w3id.org/delphi/resource/model/gpt-5.6-sol-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gpt-5.6-sol-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "GPT-5.6 Sol" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gpt/batch-2.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gpt-5.6-sol-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
  <https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
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    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2007-tropocollagen-entropic-03--gpt>;
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}