rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/np/" } } rows { name { value: "RAA4sahbCvA0nXXU5T4kTFci4kTILoGBwEnxFtZAJEslQ" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/np/RAA4sahbCvA0nXXU5T4kTFci4kTILoGBwEnxFtZAJEslQ/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { namespace { name: "rdf" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dc" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 3 } } } rows { prefix { value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "buehler-2010-helix-sheet-02" } } rows { name { value: "description" } } rows { quad { s_iri { prefix_id: 9 } p_iri { prefix_id: 7 } o_literal { lex: "The alpha-helix to beta-sheet transition under deformation is a universal mechanism in alpha-helix-rich protein materials such as wool, hair, hoof and cellular proteins, and it explains why the transition is typically seen in filaments with long alpha-helical domains." } g_iri { prefix_id: 2 name_id: 4 } } } rows { quad { p_iri { prefix_id: 7 name_id: 10 } o_literal { lex: "empirical-generalization" } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "Claim" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "label" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "The alpha-to-beta transition is a universal deformation mechanism of alpha-helix-rich materials" } } } rows { name { value: "context" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "Zhao Qin et al., \342\200\234Molecular Dynamics Simulation of the\316\261-Helix to\316\262-Sheet Transition in Coiled Protein Filaments: Evidence for a Critical Filament Length Scale\342\200\235, Physical Review Letters 104 (2010), doi:10.1103/physrevlett.104.198304; Abstract. Scope: Alpha-helix-rich protein materials" } } } rows { prefix { value: "https://doi.org/10.1103/" } } rows { name { value: "physrevlett.104.198304" } } rows { name { value: "bibliographicCitation" } } rows { quad { s_iri { prefix_id: 12 } p_iri { prefix_id: 7 } o_literal { lex: "Zhao Qin, Markus J. Buehler. Molecular Dynamics Simulation of the\316\261-Helix to\316\262-Sheet Transition in Coiled Protein Filaments: Evidence for a Critical Filament Length Scale. Physical Review Letters 104 (2010). doi:10.1103/physrevlett.104.198304" } g_iri { prefix_id: 2 name_id: 7 } } } rows { name { value: "creator" } } rows { quad { p_iri { prefix_id: 7 name_id: 19 } o_literal { lex: "Zhao Qin, Markus J. Buehler" } } } rows { name { value: "date" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#gYear" } } rows { quad { p_iri { } o_literal { lex: "2010" datatype: 1 } } } rows { name { value: "identifier" } } rows { quad { p_iri { } o_literal { lex: "doi:10.1103/physrevlett.104.198304" } } } rows { quad { o_literal { lex: "pmid:20867006" } } } rows { name { value: "title" } } rows { quad { p_iri { } o_literal { lex: "Molecular Dynamics Simulation of the\316\261-Helix to\316\262-Sheet Transition in Coiled Protein Filaments: Evidence for a Critical Filament Length Scale" } } } rows { prefix { value: "https://schema.org/" } } rows { name { value: "CreativeWork" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 13 name_id: 23 } } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-buehler-protein-materials-extractor" } } rows { name { value: "SoftwareAgent" } } rows { quad { s_iri { prefix_id: 14 } o_iri { prefix_id: 5 } } } rows { quad { p_iri { prefix_id: 11 name_id: 15 } o_literal { lex: "delphisci buehler-protein-materials claim extractor" } } } rows { name { value: "actedOnBehalfOf" } } rows { prefix { value: "https://orcid.org/" } } rows { name { value: "0009-0007-4948-9192" } } rows { quad { p_iri { prefix_id: 5 name_id: 26 } o_iri { prefix_id: 15 } } } rows { name { value: "usesModel" } } rows { prefix { value: "https://w3id.org/delphi/resource/model/" } } rows { name { value: "claude-fable-5.1" } } rows { quad { p_iri { prefix_id: 10 } o_iri { prefix_id: 16 } } } rows { name { value: "LanguageModel" } } rows { quad { s_iri { name_id: 29 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 30 } } } rows { quad { p_iri { prefix_id: 11 name_id: 15 } o_literal { lex: "Claude Fable 5.1" } } } rows { name { value: "wasAttributedTo" } } rows { quad { s_iri { prefix_id: 2 name_id: 4 } p_iri { prefix_id: 5 name_id: 31 } o_iri { prefix_id: 14 name_id: 24 } } } rows { name { value: "wasDerivedFrom" } } rows { quad { p_iri { prefix_id: 5 name_id: 32 } o_iri { prefix_id: 12 name_id: 17 } } } rows { name { value: "quote" } } rows { quad { o_iri { prefix_id: 2 name_id: 33 } } } rows { name { value: "wasGeneratedBy" } } rows { name { value: "extraction" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 2 } } } rows { name { value: "Activity" } } rows { quad { s_iri { name_id: 35 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 36 } } } rows { name { value: "qualifiedAssociation" } } rows { name { value: "extractionPlan" } } rows { quad { p_iri { } o_iri { prefix_id: 2 } } } rows { name { value: "used" } } rows { prefix { id: 6 value: "https://github.com/fractastical/delphisci/blob/b89a0890bee05ef18f8202387085854fac3ca776/claim-sources/buehler-protein-materials/inputs/" } } rows { name { value: "sources.json" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 6 } } } rows { prefix { id: 8 value: "https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=DOI:10.1103/" } } rows { name { value: "physrevlett.104.198304&resultType=core&format=json" } } rows { quad { o_iri { prefix_id: 8 } } } rows { name { value: "wasAssociatedWith" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 14 name_id: 24 } } } rows { name { value: "hadPlan" } } rows { prefix { id: 1 value: "https://github.com/fractastical/delphisci/blob/b89a0890bee05ef18f8202387085854fac3ca776/claim-sources/buehler-protein-materials/build/" } } rows { name { value: "generate.mjs" } } rows { quad { s_iri { prefix_id: 2 name_id: 38 } p_iri { prefix_id: 5 name_id: 43 } o_iri { prefix_id: 1 } } } rows { name { value: "Entity" } } rows { quad { s_iri { prefix_id: 2 name_id: 33 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 45 } } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "Quoted from the published abstract as returned by Europe PMC (2010-helix-sheet.abstract.txt, sha256 ff3d9af312f17efad8cd63a0b625adaecca946740d011c905ff3e86d566bf132); the full text was not read (not in Europe PMC open-access subset). Checked by build/check.py." } } } rows { name { value: "hadPrimarySource" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 8 name_id: 41 } } } rows { name { value: "wasQuotedFrom" } } rows { quad { p_iri { prefix_id: 5 name_id: 48 } o_iri { prefix_id: 12 name_id: 17 } } } rows { name { value: "text" } } rows { quad { p_iri { prefix_id: 13 name_id: 49 } o_literal { lex: "The alpha-helix to beta-sheet transition (\316\261-\316\262 transition) is a universal deformation mechanism in alpha-helix rich protein materials such as wool, hair, hoof, and cellular proteins." } } } rows { name { value: "sourceChecksum" } } rows { prefix { id: 3 value: "http://spdx.org/rdf/terms#" } } rows { name { value: "algorithm" } } rows { name { value: "checksumAlgorithm_sha256" } } rows { quad { s_iri { prefix_id: 2 } p_iri { prefix_id: 3 } o_iri { } } } rows { name { value: "checksumValue" } } rows { quad { p_iri { } o_literal { lex: "ff3d9af312f17efad8cd63a0b625adaecca946740d011c905ff3e86d566bf132" } } } rows { quad { p_iri { prefix_id: 11 name_id: 46 } o_literal { lex: "Checksum of the vendored text file inputs/2010-helix-sheet.abstract.txt, not of the publisher\'s copy." } } } rows { name { value: "checksum" } } rows { quad { s_iri { prefix_id: 8 name_id: 41 } p_iri { prefix_id: 3 name_id: 54 } o_iri { prefix_id: 2 name_id: 50 } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 45 } } } rows { quad { p_iri { prefix_id: 11 name_id: 15 } o_literal { lex: "Abstract of Molecular Dynamics Simulation of the\316\261-Helix to\316\262-Sheet Transition in Coiled Protein Filaments: Evidence for a Critical Filament Length Scale, as read" } } } rows { name { value: "about" } } rows { quad { p_iri { prefix_id: 13 name_id: 55 } o_iri { prefix_id: 12 name_id: 17 } } } rows { prefix { id: 9 value: "https://w3id.org/delphi/resource/domain/" } } rows { name { value: "buehler-protein-materials" } } rows { quad { s_iri { prefix_id: 9 name_id: 56 } p_iri { prefix_id: 11 name_id: 15 } o_literal { lex: "buehler-protein-materials" } g_iri { prefix_id: 2 name_id: 9 } } } rows { prefix { id: 7 value: "https://w3id.org/np/" } } rows { prefix { id: 15 value: "http://purl.org/dc/terms/" } } rows { name { value: "created" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#dateTime" } } rows { quad { s_iri { prefix_id: 7 name_id: 1 } p_iri { prefix_id: 15 name_id: 57 } o_literal { lex: "2026-11-08T04:38:11.893Z" datatype: 2 } } } rows { prefix { value: "https://orcid.org/" } } rows { quad { p_iri { name_id: 19 } o_iri { prefix_id: 16 name_id: 27 } } } rows { name { value: "license" } } rows { prefix { id: 10 value: "https://creativecommons.org/licenses/by/4.0/" } } rows { quad { p_iri { prefix_id: 15 name_id: 58 } o_iri { prefix_id: 10 name_id: 2 } } } rows { prefix { id: 6 value: "http://purl.org/nanopub/x/" } } rows { name { value: "hasNanopubType" } } rows { prefix { id: 14 value: "https://w3id.org/delphi/ontology/" } } rows { quad { p_iri { prefix_id: 6 name_id: 59 } o_iri { prefix_id: 14 name_id: 14 } } } rows { name { value: "introduces" } } rows { prefix { id: 1 value: "https://w3id.org/delphi/resource/claim/" } } rows { quad { p_iri { prefix_id: 6 name_id: 60 } o_iri { prefix_id: 1 name_id: 12 } } } rows { quad { p_iri { prefix_id: 11 name_id: 15 } o_literal { lex: "Zhao Qin et al. 2010 claim: The alpha-to-beta transition is a universal deformation mechanism of alpha-helix-rich materials" } } } rows { name { value: "domain" } } rows { quad { p_iri { prefix_id: 14 name_id: 61 } o_iri { prefix_id: 9 name_id: 56 } } } rows { name { value: "sig" } } rows { name { value: "hasAlgorithm" } } rows { quad { s_iri { prefix_id: 2 name_id: 62 } p_iri { prefix_id: 6 } o_literal { lex: "RSA" } } } rows { name { value: "hasPublicKey" } } rows { quad { p_iri { } o_literal { lex: "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } } } rows { name { value: "hasSignature" } } rows { quad { p_iri { } o_literal { lex: "d6i3l2AvICNHi4oqgul8fYnt4lgeD7w+mepH1FTffiCKX6wjsnkZhykaym+Hnv/iMw2+c8KN95ZogYPxMSE5/7GzbmiXknF1oA0i+J3yGEFWuk3hTrS9m/sjUshH6RvNm6krG9JDBVR10nWWkHd3RaBms4ah3S5llsuSKK+TaIx/0doPsfhd8ufnMmsJSasxK6p2oxdeQjthiQVsv7RgqDJisTEKWq+PS/6cheti4O22roogpOV8eumJT9vN9fqgY/N/kFQVTbWor2MWP1zv0s/v5KyYuIkkRrJZ0UzyvFO9aWO0Kh+U5MCV8G+GlvE9RPPy0+oxmn9L3ii+NPkDWQ==" } } } rows { name { value: "hasSignatureTarget" } } rows { quad { p_iri { } o_iri { prefix_id: 7 name_id: 1 } } } rows { name { value: "signedBy" } } rows { quad { p_iri { prefix_id: 6 name_id: 67 } o_iri { prefix_id: 16 name_id: 27 } } }