@prefix this: . @prefix sub: . @prefix np: . @prefix rdf: . @prefix prov: . @prefix npx: . @prefix dc: . @prefix xsd: . sub:Head { this: a np:Nanopublication; np:hasAssertion sub:assertion; np:hasProvenance sub:provenance; np:hasPublicationInfo sub:pubinfo . } sub:assertion { a prov:SoftwareAgent; "delphisci dataset-resolvability assessor (Gemini 4 Argon)"; prov:actedOnBehalfOf ; . a ; dc:description "This statement blends definitional model parameters (discretization length, bead mass, mesh size, and integration step) with empirical calibration targets for the unfolding plateau force and covalent backbone rupture strength. Whether the coarse-grained parametrization runs stably at a 15 fs timestep and reproduces the target four-regime force-extension curve can be checked directly in LAMMPS from the open-access text. However, validating the 200 pN quasi-static unfolding plateau and 5,500 pN rupture threshold against independent experimental single-molecule pulling data requires compiling scattered force-spectroscopy measurements that show noticeable sensitivity to pulling geometry and coiled-coil sequence."; dc:subject ; "Proposed test with existing data: Implement the four-segment piecewise-linear bond potential and three-body harmonic angle potential in LAMMPS with 0.5 nm bead spacing, 400 amu mass, and 15 fs timestep to verify that single-filament stretching and bending reproduce the target force-extension curve, and compare the 200 pN unfolding plateau and 5,500 pN covalent rupture force against published single-molecule force spectroscopy and reactive MD data. Confirmation requires that the coarse-grained filament reproduces the atomistic force-strain regimes and persistence length while matching rate-extrapolated experimental unfolding and bond-rupture forces."; "Gemini 4 Argon on buehler-2009-helical-networks-10: partially-resolvable, resolvability 0.66"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0"; "Experimental AFM and optical-tweezers unfolding forces for alpha-helical coiled-coils at physiological loading rates are often lower (roughly 25 to 150 pN) than the 200 pN rate-extrapolated atomistic plateau.", "Several elements of the statement (0.5 nm bead spacing, 12 nm mesh side, 15 fs timestep) are modeling choices rather than empirical hypotheses."; "0.8"^^xsd:double; , , ; "0.655"^^xsd:double; "partially-resolvable" . a ; dc:isPartOf ; dc:subject ; "Analysis feasibility of buehler-2009-helical-networks-10 by Gemini 4 Argon: 0.8"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/analysis-feasibility"; "0.8"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Data adequacy of buehler-2009-helical-networks-10 by Gemini 4 Argon: 0.6"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/data-adequacy"; "0.6"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Data existence of buehler-2009-helical-networks-10 by Gemini 4 Argon: 0.7"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/data-existence"; "0.7"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Discriminating power of buehler-2009-helical-networks-10 by Gemini 4 Argon: 0.55"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/discriminating-power"; "0.55"^^xsd:double . a ; dc:isPartOf ; dc:subject ; "Operationalizability of buehler-2009-helical-networks-10 by Gemini 4 Argon: 0.65"; prov:wasAttributedTo ; "dataset-resolvability/0.2.0/operationalizability"; "0.65"^^xsd:double . , , , , , . a ; dc:description "Open-access specification of the multilinear spring constants, transition distances, bending stiffness, and simulation parameters"; "Candidate dataset: Ackbarow et al. 2009 full text and parameter specification (PLoS ONE)"; prov:wasDerivedFrom . a ; dc:description "Open-source simulation engine for verifying stability with a 15 fs timestep and reproducing the single-filament force-strain curve"; "Candidate dataset: LAMMPS Molecular Dynamics Simulator"; prov:wasDerivedFrom . a ; dc:description "Atomic coordinates of alpha-helical domains for benchmarking coarse-grained unfolding and persistence length against all-atom simulations"; "Candidate dataset: RCSB Protein Data Bank"; prov:wasDerivedFrom . a ; dc:identifier "gemini-4-argon-medium"; "Gemini 4 Argon" . } sub:provenance { sub:assertion prov:wasAttributedTo ; prov:wasDerivedFrom , ; prov:wasGeneratedBy sub:assessment . sub:assessment a prov:Activity; prov:qualifiedAssociation sub:assessmentPlan; prov:wasAssociatedWith . sub:assessmentPlan prov:hadPlan . } sub:pubinfo { "buehler-protein-materials" . this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime; dc:creator ; dc:license ; npx:hasNanopubType ; npx:introduces ; "Gemini 4 Argon on buehler-2009-helical-networks-10: partially-resolvable, resolvability 0.66"; . sub:sig npx:hasAlgorithm "RSA"; npx:hasPublicKey "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB"; npx:hasSignature "NozJ3f56/0G+LyR3B9umqkeHkj3sJmC2APn0XkS0U0Ll2y0RGKep+2fBvhmwZnPIh78yhtDFbaqgzhudZilo/Z6oN7hEQyLP6h4NxzTvM+dirAi4RtEKQuoefpPYBVZCzdbKQ3sXvJoT8tGtzvl59xElI5DTS4iN1eAF+mDIUJvLDrJKadNNOSf99BSZoCWbqH7lccmYVgIvkFNBLhU3fGvEnVPI60DYp5mTceQZ/eZd638iOkwU0hxvfJApSXoAIhmTzexjH4ZtBsvRsRg3WbgocsYrGVlFDB3UL5qeJw8u/1abepa8q31c3GI/BVTKxwvGgjmAVX8fKEjXlt7IXQ=="; npx:hasSignatureTarget this:; npx:signedBy . }