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@prefix sub: <https://w3id.org/np/RA9XnJLlX6LSRq2EcTOjN36Bxnnd4cq4y3zIOwA_6zvWE/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

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    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
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sub:assertion {
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    dc:description "Because the claim explicitly scopes to atomistic simulation of alpha-helical and beta-sheet domains over four orders of magnitude in pulling rate, it can be directly tested today by re-implementing steered MD protocols on standard PDB folds using open MD engines. Even where experimental dynamic force spectroscopy covers lower pulling speeds than atomistic MD, the simulated force-spectrum kink separating two discrete transition states is straightforward to compute and compare against smooth moving-barrier models.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Run steered molecular dynamics simulations of standard alpha-helical (e.g., vimentin coiled-coil) and beta-sheet (e.g., titin I27) PDB structures across four orders of magnitude in pulling velocity, fit unfolding force vs. log(pulling velocity) to piecewise linear (two-slope Bell) versus continuous-curvature (Dudko-Hummer-Szabo) models, and compare via AIC/BIC.";
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    <https://w3id.org/delphi/ontology/evidenceAgainst> "Abstract-only text does not specify the exact PDB accessions, solvent treatment, or spring constants used in the original runs.",
      "Distinguishing two discrete linear Bell regimes from smooth barrier movement (Dudko-Hummer-Szabo model) over finite velocity ranges can be sensitive to thermal noise and sampling density.";
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    dc:description "Experimental atomic coordinates of canonical alpha-helical and beta-sheet domains for steered MD unfolding across pulling velocities";
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    dc:description "Open-source molecular dynamics engine with CHARMM/AMBER force fields and pull code to re-run velocity-dependent unfolding trajectories";
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  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
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  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
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