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https://w3id.org/np/RA8PwU0vP_4hI2u6prt_L8qf_P0uveD5gIHFJVddDLEpU

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Content

@prefix this: <https://w3id.org/np/RA8PwU0vP_4hI2u6prt_L8qf_P0uveD5gIHFJVddDLEpU> .
@prefix sub: <https://w3id.org/np/RA8PwU0vP_4hI2u6prt_L8qf_P0uveD5gIHFJVddDLEpU/> .
@prefix np: <http://www.nanopub.org/nschema#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix prov: <http://www.w3.org/ns/prov#> .
@prefix npx: <http://purl.org/nanopub/x/> .
@prefix dc: <http://purl.org/dc/terms/> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .

sub:Head {
  this: a np:Nanopublication;
    np:hasAssertion sub:assertion;
    np:hasProvenance sub:provenance;
    np:hasPublicationInfo sub:pubinfo .
}

sub:assertion {
  <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>
    a prov:SoftwareAgent;
    <http://www.w3.org/2000/01/rdf-schema#label> "delphisci dataset-resolvability assessor (Gemini 4 Argon)";
    prov:actedOnBehalfOf <https://orcid.org/0009-0007-4948-9192>;
    <https://w3id.org/delphi/ontology/usesModel> <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:description "The mechanical principle—that dividing a long shear interface into smaller clusters below the shear-lag/confinement length increases load sharing and total strength—can be tested computationally and checked against structural dimensions of beta-crystallites in the PDB. However, because the abstract leaves the exact nanocomposite topology under-specified and real protein materials have confounding mesoscale features, existing data only partially resolve the claim across its biological scope.";
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    <http://www.w3.org/2000/01/rdf-schema#comment> "Proposed test with existing data: Compare the ultimate tensile/shear strength and toughness of serial/parallel arrays of short beta-sheet nanocrystallites (each <= 4 H-bonds per cluster) against a single continuous beta-sheet of equal total H-bond count in coarse-grained or atomistic MD, and check whether natural high-strength beta-sheet materials (spider silk, amyloid, titin) exhibit sub-critical cluster dimensions in PDB/WAXS data.";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2008-hbond-confinement-03: partially-resolvable, resolvability 0.61";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0";
    <https://w3id.org/delphi/ontology/evidenceAgainst> "Bulk mechanical strength in real silk, amyloid, and muscle depends on higher-order hierarchical features (amorphous matrix, hydration, spinning conditions) that confound single-factor attribution to H-bond cluster size.",
      "The abstract does not specify the exact inter-cluster linker geometry or loading arrangement required to define the nanocomposite architecture.";
    <https://w3id.org/delphi/ontology/hasConfidence> "0.75"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasEvidence> <https://w3id.org/delphi/resource/evidence/buehler-2008-hbond-confinement-03--gemini--dataset-1>,
      <https://w3id.org/delphi/resource/evidence/buehler-2008-hbond-confinement-03--gemini--dataset-2>;
    <https://w3id.org/delphi/ontology/hasScore> "0.608"^^xsd:double;
    <https://w3id.org/delphi/ontology/hasVerdict> "partially-resolvable" .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--analysis-feasibility>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-analysis-feasibility>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Analysis feasibility of buehler-2008-hbond-confinement-03 by Gemini 4 Argon: 0.65";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
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  <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--data-adequacy>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
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    <http://www.w3.org/2000/01/rdf-schema#label> "Data adequacy of buehler-2008-hbond-confinement-03 by Gemini 4 Argon: 0.55";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
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    <https://w3id.org/delphi/ontology/hasScore> "0.55"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--data-existence>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-data-existence>;
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    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
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    <https://w3id.org/delphi/ontology/hasScore> "0.6"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--discriminating-power>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-discriminating-power>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Discriminating power of buehler-2008-hbond-confinement-03 by Gemini 4 Argon: 0.6";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/discriminating-power";
    <https://w3id.org/delphi/ontology/hasScore> "0.6"^^xsd:double .
  
  <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--operationalizability>
    a <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    dc:isPartOf <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini>;
    dc:subject <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0-operationalizability>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Operationalizability of buehler-2008-hbond-confinement-03 by Gemini 4 Argon: 0.65";
    prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    <https://w3id.org/delphi/ontology/assessmentType> "dataset-resolvability/0.2.0/operationalizability";
    <https://w3id.org/delphi/ontology/hasScore> "0.65"^^xsd:double .
  
  <https://w3id.org/delphi/resource/claim/buehler-2008-hbond-confinement-03> <https://w3id.org/delphi/ontology/hasAssessment>
      <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini>,
      <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--analysis-feasibility>,
      <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--data-adequacy>,
      <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--data-existence>,
      <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--discriminating-power>,
      <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini--operationalizability> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2008-hbond-confinement-03--gemini--dataset-1>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "Structures of beta-sheet-rich domains (amyloid fibrils, silk motifs, muscle titin Ig domains) to measure H-bond cluster sizes in load-bearing architectures";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: RCSB Protein Data Bank";
    prov:wasDerivedFrom <https://www.rcsb.org/> .
  
  <https://w3id.org/delphi/resource/evidence/buehler-2008-hbond-confinement-03--gemini--dataset-2>
    a <https://w3id.org/delphi/ontology/EvidenceItem>;
    dc:description "Open simulation engine for modeling multi-cluster beta-sheet nanocomposites versus monolithic sheets under load";
    <http://www.w3.org/2000/01/rdf-schema#label> "Candidate dataset: LAMMPS Molecular Dynamics Simulator";
    prov:wasDerivedFrom <https://www.lammps.org/> .
  
  <https://w3id.org/delphi/resource/model/gemini-4-argon-medium> a <https://w3id.org/delphi/ontology/LanguageModel>;
    dc:identifier "gemini-4-argon-medium";
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon" .
}

sub:provenance {
  sub:assertion prov:wasAttributedTo <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium>;
    prov:wasDerivedFrom <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/assessment/raw/gemini/batch-1.json>,
      <https://w3id.org/delphi/resource/concept/dataset-resolvability-0.2.0>;
    prov:wasGeneratedBy sub:assessment .
  
  sub:assessment a prov:Activity;
    prov:qualifiedAssociation sub:assessmentPlan;
    prov:wasAssociatedWith <https://w3id.org/delphi/resource/agent/delphisci-resolvability-assessor-gemini-4-argon-medium> .
  
  sub:assessmentPlan prov:hadPlan <https://github.com/fractastical/delphisci/blob/67fe5b156cfeca15a2ded33e0face4177d03101c/claim-sources/buehler-protein-materials/README.md> .
}

sub:pubinfo {
  <https://w3id.org/delphi/resource/domain/buehler-protein-materials> <http://www.w3.org/2000/01/rdf-schema#label>
      "buehler-protein-materials" .
  
  this: dc:created "2026-11-08T04:48:50.317Z"^^xsd:dateTime;
    dc:creator <https://orcid.org/0009-0007-4948-9192>;
    dc:license <https://creativecommons.org/licenses/by/4.0/>;
    npx:hasNanopubType <https://w3id.org/delphi/ontology/LLMClaimAssessment>;
    npx:introduces <https://w3id.org/delphi/resource/assessment/buehler-2008-hbond-confinement-03--gemini>;
    <http://www.w3.org/2000/01/rdf-schema#label> "Gemini 4 Argon on buehler-2008-hbond-confinement-03: partially-resolvable, resolvability 0.61";
    <https://w3id.org/delphi/ontology/domain> <https://w3id.org/delphi/resource/domain/buehler-protein-materials> .
  
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}