rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/np/" } } rows { name { value: "RA6WyY9uv7SZEgda5D8_ru38bhuCKJtXDTxddsxfqHKvo" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/np/RA6WyY9uv7SZEgda5D8_ru38bhuCKJtXDTxddsxfqHKvo/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { namespace { name: "rdf" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dc" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 3 } } } rows { prefix { value: "https://w3id.org/delphi/resource/assessment/" } } rows { name { value: "aristotle-ha05-06--claim-test" } } rows { name { value: "description" } } rows { quad { s_iri { prefix_id: 9 } p_iri { prefix_id: 7 } o_literal { lex: "The Europe PMC XML of PMC2595796 was fetched. It is marked scanned and does not contain the group names of Table 1 (birds, chelonians, lizards, snakes, crocodilians). The Europe PMC PDF render URL returned HTTP 403 with content type text/html; charset=UTF-8, so the table was not read. No bladder mark was entered from any other source." } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "Assessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "Measured: null fraction of non-mammal, non-chelonian groups in Bentley Table 1 marked as lacking a urinary bladder (n = 0, Table 1 is not in the Europe PMC XML, and the PDF request did not return a PDF). Interpretation: The History of Animals sentence says that animals which are not viviparous have no bladder except the tortoise, and that tortoises are oviparous. The test is that reproductive-mode claim. It is not the integument claim in Parts of Animals, which is scored separately. A group the table marks as variable has a bladder in some of its members, so it does not support \'no bladder\'. The ostrich, if named, is not a tortoise." } } } rows { name { value: "label" } } rows { quad { p_iri { } o_literal { lex: "Claim test of aristotle-ha05-06: inconclusive, confidence 0.84" } } } rows { name { value: "seeAlso" } } rows { prefix { value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha05-06/" } } rows { name { value: "result.json" } } rows { quad { p_iri { } o_iri { prefix_id: 12 } } } rows { name { value: "wasAttributedTo" } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-claim-tester-grok-4-7" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 13 } } } rows { name { value: "admissibleDatasets" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "A checksummed comparative table of urinary-bladder presence by vertebrate group. A swim-bladder column is not a urinary bladder. The tortoise row is the stated exception and is not in the denominator." } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { } o_literal { lex: "claim-test/0.1.0" } } } rows { name { value: "dataKind" } } rows { quad { p_iri { } o_literal { lex: "none" } } } rows { name { value: "disconfirmingObservation" } } rows { quad { p_iri { } o_literal { lex: "Fewer than half of those groups are marked as lacking a bladder." } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "A swim bladder was not used. FishBase GasBladder is a different organ and was not fetched." } } } rows { quad { o_literal { lex: "Bentley 1979 is the planned table. The PMC record says the article is scanned, the XML has the abstract only, and the PDF URL returned HTTP 403 rather than a PDF." } } } rows { quad { o_literal { lex: "No group was scored. Mammals, tortoises, birds, lizards, snakes, crocodilians, amphibians and fishes are all uncounted. This file does not use a bladder verdict from any other claim." } } } rows { name { value: "expectedObservation" } } rows { quad { p_iri { } o_literal { lex: "At least 90 percent of the non-mammal, non-chelonian groups in Bentley\'s table are marked as lacking a urinary bladder, with no non-tortoise exception named." } } } rows { name { value: "failCriterion" } } rows { quad { p_iri { } o_literal { lex: "Refutes if n >= 6 and f < 0.50. Mixed if n >= 6 and 0.50 <= f < 0.90. Inconclusive, reason underpowered, if n < 6. Inconclusive, reason data-unavailable, if the paper cannot be fetched or Table 1 cannot be read. Inconclusive, reason not-operationalizable, if the table has no absent-or-present marks." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.84" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "aristotle-ha05-06--claim-test--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 14 } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "inconclusive" } } } rows { name { value: "hypothesis" } } rows { quad { p_iri { } o_literal { lex: "Vertebrate groups that are not viviparous lack a urinary bladder, with tortoises the only exception." } } } rows { name { value: "inferenceMethod" } } rows { quad { p_iri { } o_literal { lex: "f = groups marked absent, with no non-tortoise exception, divided by non-mammal non-chelonian groups in the table. Pass at f >= 0.90 and n >= 6. Refute at f < 0.50." } } } rows { name { value: "passCriterion" } } rows { quad { p_iri { } o_literal { lex: "Score the groups in Bentley 1979, Table 1 (PMC2595796), other than mammals and other than the tortoise exception. Mammals are left out because the table presents them as having a bladder and the claim is about animals that are not viviparous. Chelonia (tortoises and turtles) are the stated exception: a bladder in that group is recorded and is not a counterexample, and the group is not in the denominator. A group is consistent when the table marks the bladder absent, with no prose exception other than a tortoise. A mark of present, or of present-or-absent, is not consistent. Birds are not consistent if the paper says they lack a bladder except the ostrich. Let n be the scored groups and f the consistent fraction. The claim passes if n >= 6 and f >= 0.90." } } } rows { name { value: "preregistered" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#boolean" } } rows { quad { p_iri { } o_literal { lex: "false" datatype: 2 } } } rows { prefix { value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "aristotle-ha05-06" } } rows { name { value: "hasAssessment" } } rows { quad { s_iri { prefix_id: 15 } p_iri { prefix_id: 10 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { s_iri { prefix_id: 14 name_id: 30 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "Full text XML. It has the abstract and not Table 1. The PDF request is recorded in measured.extra and was not a PDF." } } } rows { name { value: "license" } } rows { quad { p_iri { name_id: 38 } o_literal { lex: "No Creative Commons URL is in the Europe PMC XML. The record is the open PMC entry for a 1979 Yale Journal of Biology and Medicine article marked scanned." } } } rows { name { value: "EvidenceItem" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 39 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: Bentley PJ 1979, The vertebrate urinary bladder: osmoregulatory and other uses. Yale J Biol Med 52:563-568" } } } rows { name { value: "atLocation" } } rows { prefix { value: "https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2595796/" } } rows { name { value: "fullTextXML" } } rows { quad { p_iri { prefix_id: 5 name_id: 40 } o_iri { prefix_id: 16 } } } rows { name { value: "wasDerivedFrom" } } rows { prefix { id: 6 value: "https://europepmc.org/article/PMC/" } } rows { name { value: "PMC2595796" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 6 } } } rows { name { value: "hasChecksum" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "sha256:bbee8080d6f53dabb274ae9db7b99973c76dee9cd7a08a7f74667b4d2b64be5f" } } } rows { name { value: "SoftwareAgent" } } rows { quad { s_iri { prefix_id: 13 name_id: 20 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 45 } g_iri { prefix_id: 2 name_id: 7 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "delphisci claim tester (Grok 4.7; cursor/aristotle-life-history-g-a908)" } } } rows { name { value: "actedOnBehalfOf" } } rows { prefix { id: 8 value: "https://orcid.org/" } } rows { name { value: "0009-0007-4948-9192" } } rows { quad { p_iri { prefix_id: 5 name_id: 46 } o_iri { prefix_id: 8 } } } rows { name { value: "usesModel" } } rows { prefix { id: 1 value: "https://w3id.org/delphi/resource/model/" } } rows { name { value: "grok-4-7" } } rows { quad { p_iri { prefix_id: 10 } o_iri { prefix_id: 1 } } } rows { name { value: "identifier" } } rows { quad { s_iri { name_id: 49 } p_iri { prefix_id: 7 } o_literal { lex: "Grok 4.7" } } } rows { name { value: "LanguageModel" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 51 } } } rows { quad { s_iri { prefix_id: 2 name_id: 4 } p_iri { prefix_id: 5 name_id: 19 } o_iri { prefix_id: 13 } } } rows { quad { p_iri { prefix_id: 5 name_id: 42 } o_iri { prefix_id: 12 name_id: 18 } } } rows { name { value: "wasGeneratedBy" } } rows { name { value: "test" } } rows { quad { p_iri { prefix_id: 5 name_id: 52 } o_iri { prefix_id: 2 } } } rows { name { value: "plan" } } rows { name { value: "hadPlan" } } rows { prefix { id: 3 value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/" } } rows { name { value: "README.md" } } rows { quad { s_iri { } p_iri { prefix_id: 5 } o_iri { prefix_id: 3 } } } rows { name { value: "Activity" } } rows { quad { s_iri { prefix_id: 2 name_id: 53 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 57 } } } rows { name { value: "qualifiedAssociation" } } rows { quad { p_iri { } o_iri { prefix_id: 2 name_id: 54 } } } rows { name { value: "wasAssociatedWith" } } rows { quad { p_iri { prefix_id: 5 name_id: 59 } o_iri { prefix_id: 13 name_id: 20 } } } rows { prefix { id: 15 value: "https://w3id.org/np/" } } rows { name { value: "created" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#dateTime" } } rows { quad { s_iri { prefix_id: 15 name_id: 1 } p_iri { prefix_id: 7 name_id: 60 } o_literal { lex: "2026-11-08T16:24:31.762Z" datatype: 3 } g_iri { prefix_id: 2 name_id: 9 } } } rows { name { value: "creator" } } rows { quad { p_iri { prefix_id: 7 name_id: 61 } o_iri { prefix_id: 8 name_id: 47 } } } rows { prefix { id: 9 value: "https://creativecommons.org/licenses/by/4.0/" } } rows { quad { p_iri { prefix_id: 7 name_id: 38 } o_iri { prefix_id: 9 name_id: 2 } } } rows { prefix { id: 14 value: "http://purl.org/nanopub/x/" } } rows { name { value: "hasNanopubType" } } rows { quad { p_iri { prefix_id: 14 name_id: 62 } o_iri { prefix_id: 10 name_id: 14 } } } rows { name { value: "introduces" } } rows { prefix { id: 16 value: "https://w3id.org/delphi/resource/assessment/" } } rows { quad { p_iri { prefix_id: 14 name_id: 63 } o_iri { prefix_id: 16 name_id: 12 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Claim test of aristotle-ha05-06: inconclusive, confidence 0.84" } } } rows { name { value: "domain" } } rows { prefix { id: 6 value: "https://w3id.org/delphi/resource/domain/" } } rows { name { value: "aristotle-biology" } } rows { quad { p_iri { prefix_id: 10 name_id: 64 } o_iri { prefix_id: 6 } } } rows { name { value: "sig" } } rows { name { value: "hasAlgorithm" } } rows { quad { s_iri { prefix_id: 2 } p_iri { prefix_id: 14 } o_literal { lex: "RSA" } } } rows { name { value: "hasPublicKey" } } rows { quad { p_iri { } o_literal { lex: "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAyFHtPB6p0mCjDozxlOY9CmO3nBm7Te3jFbXyLmM+G1tGe47Da0jYIbhkl9Oo1ZjxmCa3LCwlEqK8gj6hEIcL4ahW30JXh9HycfKVk1bugkzMEV15tJdTzAU3sGMFnbNsn43xY2LFLy45tApkRm5byEiM7oRRrooIdwoQKnP4Wzq/bfAoJ9qvW+MGkelyOTd1jbSt+KfmT7xKmDfWzAHddUlWwMX2QJOLxDaffOteTop6ZRgPiNmPJKA/S62Gac9XtSYT3oDkZ6/nr5cxxNLpOyxTf5FPISiCe11xYO/unYjY+mwnOfA8yhJIyx1l0O9I0vpOpn+E5TvyHJV+oSTrvwIDAQAB" } } } rows { name { value: "hasSignature" } } rows { quad { p_iri { } o_literal { lex: "mIH9DhxNEazQuoeMsrpi9nIL4m72OG9g/AUpYLRrPeYWijtBItY+hGLkZiSg9j8+8tBj8hGUpUEcGFN5Nyf/zZ0C/416ILDjc/gLNdk8miFzOK79x5MYSExsfD5BoSNwvoWadugaGrT6WganqsZ/oJvta+/8dGcBthjNorxd82qfUURH0KeHeZgrhmFkOVtjOUurLq55XeWDpUaAvomo/tVT/ZN9zyw7OW7k4zBkN3OR1TD5zP0vwbjH7+QFXyB1f88Ki9R2lDKUh982Wl2PPdbFofz/ddP/yZSxm4X2K7rxH0cNiBsQdMHLn8CLieWu9uotpVTwqVS6dpsJ3QvfXg==" } } } rows { name { value: "hasSignatureTarget" } } rows { quad { p_iri { } o_iri { prefix_id: 15 name_id: 1 } } } rows { name { value: "signedBy" } } rows { quad { p_iri { prefix_id: 14 name_id: 71 } o_iri { prefix_id: 8 name_id: 47 } } }