rows { options { physical_type: PHYSICAL_STREAM_TYPE_QUADS max_name_table_size: 128 max_prefix_table_size: 16 max_datatype_table_size: 16 logical_type: LOGICAL_STREAM_TYPE_DATASETS version: 2 } } rows { prefix { value: "https://w3id.org/np/" } } rows { name { value: "RA2Hc1OmE9MC0RGGaInQt84pF9U5beyznvsCngjURZ0bg" } } rows { namespace { name: "this" value { prefix_id: 1 } } } rows { prefix { value: "https://w3id.org/np/RA2Hc1OmE9MC0RGGaInQt84pF9U5beyznvsCngjURZ0bg/" } } rows { name { } } rows { namespace { name: "sub" value { prefix_id: 2 } } } rows { prefix { value: "http://www.nanopub.org/nschema#" } } rows { namespace { name: "np" value { prefix_id: 3 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/1999/02/22-rdf-syntax-ns#" } } rows { namespace { name: "rdf" value { prefix_id: 4 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/ns/prov#" } } rows { namespace { name: "prov" value { prefix_id: 5 name_id: 2 } } } rows { prefix { value: "http://purl.org/nanopub/x/" } } rows { namespace { name: "npx" value { prefix_id: 6 name_id: 2 } } } rows { prefix { value: "http://purl.org/dc/terms/" } } rows { namespace { name: "dc" value { prefix_id: 7 name_id: 2 } } } rows { prefix { value: "http://www.w3.org/2001/XMLSchema#" } } rows { namespace { name: "xsd" value { prefix_id: 8 name_id: 2 } } } rows { name { value: "hasAssertion" } } rows { name { value: "assertion" } } rows { name { value: "Head" } } rows { quad { s_iri { prefix_id: 1 name_id: 1 } p_iri { prefix_id: 3 name_id: 3 } o_iri { prefix_id: 2 } g_iri { } } } rows { name { value: "hasProvenance" } } rows { name { value: "provenance" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "hasPublicationInfo" } } rows { name { value: "pubinfo" } } rows { quad { p_iri { prefix_id: 3 } o_iri { prefix_id: 2 } } } rows { name { value: "type" } } rows { name { value: "Nanopublication" } } rows { quad { p_iri { prefix_id: 4 } o_iri { prefix_id: 3 } } } rows { prefix { value: "https://w3id.org/delphi/resource/assessment/" } } rows { name { value: "aristotle-ha05-08--claim-test" } } rows { name { value: "description" } } rows { quad { s_iri { prefix_id: 9 } p_iri { prefix_id: 7 } o_literal { lex: "analysis.py matched AnAge and PanTHERIA column names to mating posture, tentacle interlacing, mouth-to-mouth and copulatory position, and searched the FishBase SPECIES, reproduction and morphology manuals plus the REPRODUCTION table manual. No posture column and no pre-registered posture token was found. The WoRMS record for Octopus vulgaris returns taxonomic fields only. No species was assigned a posture, so no modal class was computed." } g_iri { prefix_id: 2 name_id: 4 } } } rows { prefix { value: "https://w3id.org/delphi/ontology/" } } rows { name { value: "Assessment" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 14 } } } rows { prefix { value: "http://www.w3.org/2000/01/rdf-schema#" } } rows { name { value: "comment" } } rows { quad { p_iri { prefix_id: 11 } o_literal { lex: "Measured: 0 columns matching the pre-registered variable (n = 86). Interpretation: The same paragraph distinguishes the shared posture (mouth to mouth, tentacles interlaced, suckers in contact) from a report Aristotle attributes to others, that the male has a penis in one tentacle which enters the funnel. Only the shared posture is the claim. A modern hectocotylus description counts as that claim only when the record also states the mouth-to-mouth or tentacle-interlacing posture. WoRMS names are admissible for placing a species in a group, not as evidence of how it mates." } } } rows { name { value: "label" } } rows { quad { p_iri { } o_literal { lex: "Claim test of aristotle-ha05-08: inconclusive, confidence 0.86" } } } rows { name { value: "seeAlso" } } rows { prefix { value: "https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ha05-08/" } } rows { name { value: "result.json" } } rows { quad { p_iri { } o_iri { prefix_id: 12 } } } rows { name { value: "wasAttributedTo" } } rows { prefix { value: "https://w3id.org/delphi/resource/agent/" } } rows { name { value: "delphisci-claim-tester-grok-4-7" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 13 } } } rows { name { value: "admissibleDatasets" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "A public species-level table from FishBase or another listed source (AnAge, PanTHERIA, AVONET, GBIF, NCBI, WoRMS, PBDB) or a checksummed paper supplement, with a mating-posture or copulatory-position field and a taxon assignable to the three groups. Licence stated. A narrative encyclopedia page is not a table." } } } rows { name { value: "assessmentType" } } rows { quad { p_iri { } o_literal { lex: "claim-test/0.1.0" } } } rows { name { value: "dataKind" } } rows { quad { p_iri { } o_literal { lex: "none" } } } rows { name { value: "disconfirmingObservation" } } rows { quad { p_iri { } o_literal { lex: "The modal postures of at least two groups differ, or a group with at least two scored species has no mouth-interlace record. No posture column does not disconfirm the claim." } } } rows { name { value: "evidenceAgainst" } } rows { quad { p_iri { } o_literal { lex: "FishBase describes reproduction with mode, fertilization and spawning fields. Those fields are not the mouth-to-mouth posture tokens fixed before download." } } } rows { quad { o_literal { lex: "The WoRMS taxon page states that the webpage text is licensed under a Creative Commons Attribution 4.0 License. The page is not a posture table." } } } rows { quad { o_literal { lex: "Zero of the three groups has a posture record. The pre-registration calls that data-unavailable, and it says a taxonomic list is not a mating posture." } } } rows { name { value: "expectedObservation" } } rows { quad { p_iri { } o_literal { lex: "In each of Octopoda, Sepiida and the squid orders, the modal recorded mating posture is mouth-to-mouth tentacle interlacing, and that class covers at least half of the species with a posture record in the group." } } } rows { name { value: "failCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered. The claim is refuted if at least two groups have posture records and their modal classes differ, or if any group with at least two scored species has zero mouth-interlace records. Mixed if every group has at least one matching species but one group\'s modal class is not mouth-interlace. If no posture field exists, or fewer than two of the three groups have any posture record, inconclusive with reason data-unavailable. A taxonomic list of the three groups, a spermatophore-length column, or a \'reproduces sexually\' flag is not a mating posture." } } } rows { name { value: "hasConfidence" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#double" } } rows { quad { p_iri { } o_literal { lex: "0.86" datatype: 1 } } } rows { name { value: "hasEvidence" } } rows { prefix { value: "https://w3id.org/delphi/resource/evidence/" } } rows { name { value: "aristotle-ha05-08--claim-test--dataset-1" } } rows { quad { p_iri { } o_iri { prefix_id: 14 } } } rows { name { value: "aristotle-ha05-08--claim-test--dataset-2" } } rows { quad { o_iri { } } } rows { name { value: "aristotle-ha05-08--claim-test--dataset-3" } } rows { quad { o_iri { } } } rows { name { value: "aristotle-ha05-08--claim-test--dataset-4" } } rows { quad { o_iri { } } } rows { name { value: "hasVerdict" } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "inconclusive" } } } rows { name { value: "hypothesis" } } rows { quad { p_iri { } o_literal { lex: "If the octopus, the cuttlefish and the squid mate in the same way, uniting at the mouth by interlacing tentacles, then a species-level mating-posture table will show that posture as the modal recorded posture in each of the three groups." } } } rows { name { value: "inferenceMethod" } } rows { quad { p_iri { } o_literal { lex: "Species are classed by the pre-registered tokens into mouth-interlace versus other. The denominator in each group is the number of species with a non-missing posture. The modal class and its share are compared across the three groups. Support requires the same modal class, mouth-interlace, at a share of at least one half, in all three. Differing modes refute. A missing field is data-unavailable." } } } rows { name { value: "passCriterion" } } rows { quad { p_iri { } o_literal { lex: "Pre-registered. Quote: \'Molluscs, such as the octopus, the sepia, and the calamary, have sexual intercourse all in the same way; that is to say, they unite at the mouth, by an interlacing of their tentacles.\' Groups: octopus = order Octopoda; cuttlefish = order Sepiida (sepia); squid = Teuthida, Oegopsida, Myopsida or family Loliginidae (calamary). A species matches the claimed posture if its posture field contains one of these tokens: \'mouth to mouth\', \'mouth-to-mouth\', \'head to head\', \'tentacles interlac\', \'arms interlac\', \'beak to beak\'. A hectocotylus or mantle-cavity insertion, with none of those tokens, is a different posture and does not match. The claim passes only if each of the three groups has at least one species with a posture record, the modal posture class in each group is the mouth-interlace class, and that class is at least half of the species with a posture record in that group." } } } rows { name { value: "preregistered" } } rows { datatype { value: "http://www.w3.org/2001/XMLSchema#boolean" } } rows { quad { p_iri { } o_literal { lex: "false" datatype: 2 } } } rows { prefix { value: "https://w3id.org/delphi/resource/claim/" } } rows { name { value: "aristotle-ha05-08" } } rows { name { value: "hasAssessment" } } rows { quad { s_iri { prefix_id: 15 } p_iri { prefix_id: 10 } o_iri { prefix_id: 9 name_id: 12 } } } rows { quad { s_iri { prefix_id: 14 name_id: 30 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "Column names checked against the pre-registered variable" } } } rows { name { value: "license" } } rows { quad { p_iri { name_id: 41 } o_literal { lex: "CC BY 3.0. The fetched page https://genomics.senescence.info/legal.html says this work is licensed under a Creative Commons Attribution 3.0 Unported License, that the data sheets, including the observations in AnAge, are copyrighted, and that most content in HAGR is in the public domain." } } } rows { name { value: "EvidenceItem" } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 42 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: AnAge, the Animal Ageing and Longevity Database" } } } rows { name { value: "atLocation" } } rows { prefix { value: "https://genomics.senescence.info/" } } rows { name { value: "legal.html" } } rows { quad { p_iri { prefix_id: 5 name_id: 43 } o_iri { prefix_id: 16 } } } rows { prefix { id: 6 value: "https://genomics.senescence.info/species/" } } rows { quad { o_iri { prefix_id: 6 name_id: 2 } } } rows { name { value: "dataset.zip" } } rows { quad { o_iri { name_id: 45 } } } rows { name { value: "wasDerivedFrom" } } rows { quad { p_iri { prefix_id: 5 } o_iri { prefix_id: 6 name_id: 2 } } } rows { name { value: "hasChecksum" } } rows { quad { p_iri { prefix_id: 10 name_id: 47 } o_literal { lex: "sha256:708d25e725b8cb3625e0a5c03062bbb044985bea283af2d14433739dea9f8690" } } } rows { quad { o_literal { lex: "sha256:833190daa11a177ef557c70c70a746eab797303f775e168f64ad1ca72f623d05" } } } rows { quad { o_literal { lex: "sha256:e3ddb66e32e973a79932859ba53013e8f60d957c6ec01c6eb573e3ea3018d630" } } } rows { quad { s_iri { prefix_id: 14 name_id: 31 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "Column names checked against the pre-registered variable" } } } rows { quad { p_iri { name_id: 41 } o_literal { lex: "Not stated. The first 8000 characters of the retrieved file contain no license, copyright, or Creative Commons string." } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 42 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: PanTHERIA 1.0 WR05 ecological trait table" } } } rows { prefix { id: 8 value: "https://esapubs.org/archive/ecol/E090/184/" } } rows { name { value: "PanTHERIA_1-0_WR05_Aug2008.txt" } } rows { quad { p_iri { prefix_id: 5 name_id: 43 } o_iri { prefix_id: 8 name_id: 48 } } } rows { quad { p_iri { prefix_id: 5 name_id: 46 } } } rows { quad { p_iri { prefix_id: 10 } o_literal { lex: "sha256:36e64314cae0394a966a63b949504d1975ac5c5629e05e36c1b139b3348f044a" } } } rows { quad { s_iri { prefix_id: 14 name_id: 32 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "Codebook searched for the pre-registered variable; not a species-score table" } } } rows { quad { p_iri { name_id: 41 } o_literal { lex: "Not stated on the fetched FishBase manual pages." } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 42 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: FishBase table manuals" } } } rows { prefix { id: 1 value: "https://www.fishbase.se/manual/English/" } } rows { name { value: "FishBaseThe_SPECIES_Table.htm" } } rows { quad { p_iri { prefix_id: 5 name_id: 43 } o_iri { prefix_id: 1 name_id: 49 } } } rows { name { value: "fishbasemorphology_and_physiology.htm" } } rows { quad { o_iri { } } } rows { name { value: "fishbasereproduction00002700.htm" } } rows { quad { o_iri { } } } rows { name { value: "fishbasethe_REPRODUCTION_Table.htm" } } rows { quad { o_iri { } } } rows { quad { p_iri { prefix_id: 5 name_id: 46 } o_iri { prefix_id: 1 name_id: 49 } } } rows { quad { p_iri { prefix_id: 10 name_id: 47 } o_literal { lex: "sha256:25184f3b2dd858aeb57ff34a903ccf6763b2114a79e64882a7682333197a4808" } } } rows { quad { o_literal { lex: "sha256:2651a55498191d537a5afad930173accefe828c06bb4028a51c66bbe2ccb6813" } } } rows { quad { o_literal { lex: "sha256:4a250f19b12ce0cd384ab3648734831e1fd969a03894ce2d5c04137149bda4c5" } } } rows { quad { o_literal { lex: "sha256:93ffbf8da39335434b66a4657e0e06d9ca7fcc3fe0206478fbbac27b4cc07687" } } } rows { quad { s_iri { prefix_id: 14 name_id: 33 } p_iri { prefix_id: 7 name_id: 13 } o_literal { lex: "Taxonomic placement only. Record keys contain no mating posture." } } } rows { quad { p_iri { name_id: 41 } o_literal { lex: "CC BY 4.0 for the webpage text, as stated on the fetched taxon page." } } } rows { quad { p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 10 name_id: 42 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "Dataset: WoRMS Aphia record for Octopus vulgaris" } } } rows { prefix { id: 3 value: "https://www.marinespecies.org/" } } rows { name { value: "aphia.php?p=taxdetails&id=140605" } } rows { quad { p_iri { prefix_id: 5 name_id: 43 } o_iri { prefix_id: 3 name_id: 53 } } } rows { prefix { id: 2 value: "https://www.marinespecies.org/rest/AphiaRecordsByName/" } } rows { name { value: "Octopus%20vulgaris?like=false&marine_only=false" } } rows { quad { o_iri { prefix_id: 2 } } } rows { quad { p_iri { prefix_id: 5 name_id: 46 } o_iri { prefix_id: 3 name_id: 53 } } } rows { quad { p_iri { prefix_id: 10 name_id: 47 } o_literal { lex: "sha256:56efba786bc3ab4c40ba264e07e2e02682276a7e8d730cb5778f7d32f5864e2f" } } } rows { quad { o_literal { lex: "sha256:6fbeef94e0c7d317579116f5c37319752dd386770d66d584f1cefc61be3c3979" } } } rows { name { value: "SoftwareAgent" } } rows { prefix { id: 12 value: "https://w3id.org/np/RA2Hc1OmE9MC0RGGaInQt84pF9U5beyznvsCngjURZ0bg/" } } rows { quad { s_iri { prefix_id: 13 name_id: 20 } p_iri { prefix_id: 4 name_id: 10 } o_iri { prefix_id: 5 name_id: 55 } g_iri { prefix_id: 12 name_id: 7 } } } rows { quad { p_iri { prefix_id: 11 name_id: 16 } o_literal { lex: "delphisci claim tester (grok-4.7; 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