. . . . . . "2026-03-13T14:56:00.669700+00:00"^^ . . . . "1"^^ . "-R '@RG\\tID:{sample}\\tSM:{sample}'" . . "2"^^ . "samtools" . . "3"^^ . "coordinate" . . "4"^^ . "" . . "1"^^ . "" . . "all" . "all" . . "calls/all.vcf" . "envs/bcftools.yml" . "shell" . "bcftools_call" . . "sorted_reads/A.bam" . "sorted_reads/B.bam" . "sorted_reads/{sample}.bam" . . . . . "envs/bwa.yml" . "v8.1.1/bio/bwa/mem" . "[\"-R '@RG\\\\tID:{sample}\\\\tSM:{sample}'\", \"samtools\", \"coordinate\", \"\"]" . "bwa_mem" . . "calls/positions.png" . "envs/matplotlib.yml" . "scripts/plot-positions.py" . "plot_positions" . . "calls/quals.png" . "envs/matplotlib.yml" . "scripts/plot-quals.py" . "plot_quals" . . "sorted_reads/A.bam.bai" . "sorted_reads/B.bam.bai" . "sorted_reads/{sample}.bam.bai" . . "envs/samtools.yml" . "v5.7.0/bio/samtools/index" . "[\"\"]" . "samtools_index" . . "{\"samples\": {\"A\": \"data/samples/A.fastq\", \"B\": \"data/samples/B.fastq\"}}" . "config/config.yaml" . "Snakefile" . "config/config.yaml" . "envs/bcftools.yml" . "envs/bwa.yml" . "envs/matplotlib.yml" . "envs/samtools.yml" . "scripts/plot-positions.py" . "scripts/plot-quals.py" . "" . . . . . . . "/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile" . "/home/meesters/Documents/Teaching/snakemake-hpc-teaching-material/snakemake-tutorial/Snakefile" . "{}" . . "8"^^ . "2"^^ . "6"^^ . "2026-03-13T15:56:00.698781"^^ . . "2026-03-13T15:56:00.698781"^^ . . "RSA" . "MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAkOFUnnRCp/k9/0ugvx8zQJ+Qc675W1Ug6F839+xvJ2QsSBu4iOJ1O2kJCmb3tALp3gJOt8sffRot3VrfY1hbgXxL7BVtDsfHHmXVff4YCeg5Ycdn5cDpLawDpAdYwMhK0LwIkZ3fwH9/o9JniYKXLV/jpF9bMKyiw/6tqlCHaMW1r8gzZzoxVIAakwvlABoY0iNoToLTlBRXEI4mLUNjDMnMwQgfh1KXMxMruNjW3wJyeDEIfa2ooAt0E4CRM9pkrEb37NzD9Jz8aSUFFY6BvIxF4ixK7rm6IUDvQ76LqXkEmgSeRv1kw7gnCe9wV/wHd0ZeW4heoBXmLHX3MvHfjwIDAQAB" . "XLpj3h5lBHdnR7H5dBpBYMFlqD6e4MC4e1sfDW4JjeO7uOq3xR4JIvhM9M5yFoLJrxEdoczvEdeUYKZg2TtLGLr1DoPXnF6W+mXIL8QkX0XrxykP1ZHAag33IqtqqDXDnul1oWgxBOShmVo+Cze9TVrBb50dvPKYg6Yc/WjXAxqTyJBlPvzN5KOYv49PaEblNp+xCX7S+ALkIaPkiy+atp+a1oUgcT5z9hizwEiTto/24WG7qW90mGxS3nNj3wSr7DC8GCMQ1mO/cP+VRO1bk1OqThtyTwTjYnj0QnjTTwkjgoDlFgNUpwkVXTCpi8NqfcN8L9eGQy2drGjgh1N4qQ==" . . .