https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8/Head https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8 http://www.nanopub.org/nschema#hasAssertion https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8/assertion https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8 http://www.nanopub.org/nschema#hasProvenance https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8/provenance https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8 http://www.nanopub.org/nschema#hasPublicationInfo https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8/pubinfo https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8 http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.nanopub.org/nschema#Nanopublication https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8/assertion https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 http://purl.org/dc/terms/description Downloaded the ZFIN anatomy-item and stage-series files, hashed them, and joined each structure's start stage to the stage series. The span of begin hours, the number of distinct start stages, and the modal-stage fraction were compared with the pre-registered thresholds. No expression file was used. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/Assessment https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 http://www.w3.org/2000/01/rdf-schema#comment Measured: 1080 hours between earliest and latest anatomy start stage (n = 3113). Interpretation: Aristotle's contrast is with the view that all parts exist together from the beginning. The ZFIN start stage is the curated onset of each anatomical term in Danio rerio, and the stage series gives that onset in hours post-fertilization. This is one animal, used as a direct observational series of the kind the claim says is plain to the senses. It is not a survey of all animal embryos. End stages are ignored. Gene-expression files are not used: the question is when the part is said to exist, not when a transcript is detected. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 http://www.w3.org/2000/01/rdf-schema#label Claim test of aristotle-ga02-10 (pr-127): supports, confidence 0.6 https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 http://www.w3.org/2000/01/rdf-schema#seeAlso https://github.com/fractastical/delphisci/blob/bf2af6ee0a84e23ffa6414ad7a0a50a8c276506e/test-data/claim-tests/aristotle-biology/aristotle-ga02-10/pr-127/result.json https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 http://www.w3.org/ns/prov#wasAttributedTo https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/admissibleDatasets A public developmental anatomy ontology for an animal embryo in which each structure has a start stage tied to a staging series with begin times in hours. The ontology must be curated from developmental observations, not from Aristotle. One species can show that succession happens in a real embryo. It does not survey every phylum. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/assessmentType claim-test/0.1.0 https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/dataKind biological https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/disconfirmingObservation At least 95% of structures are annotated as present from a stage that begins at or before 1 hour, and there is no additional spread of onsets across 5 stages and 24 hours. That pattern is the preformation reading: the parts are already there at the start. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/evidenceAgainst An ontology start stage is a curated statement of onset, not a stopwatch reading taken for this test. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/evidenceAgainst Before this registration the ZFIN download index was read (tab-separated files, column names, sizes 220 KB and 2 KB, report date 31 Oct 2026) and HTTP headers were checked (content-length 226263 for anatomy_item.txt and 2766 for stage_ontology.txt). A web retrieval also returned portions of both files while the URLs were being identified. No count of distinct start stages and no hour span was computed. The thresholds are round numbers taken from the claim, not from that glimpse. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/evidenceAgainst No SPDX licence is stated on https://zfin.org/downloads. The files are public daily reports. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/evidenceAgainst The download page states no SPDX licence. The files are replaced daily, so the recorded SHA-256 is the snapshot that was measured. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/evidenceAgainst The modal start stage is named Unknown. Those rows have no curated onset, and the stage series places Unknown at 0 hours. The verdict follows the pre-registered rule on the full set. The same span and stage count with Unknown removed are reported in measured.extra.excluding_unknown_stage and do not set the verdict. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/expectedObservation Zebrafish anatomical structures are first recorded at different developmental stages, and those onset times span at least 24 hours across at least 5 stages. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/failCriterion Pre-registered. Refutes if at least 50 items match and at least 95% of them share one start stage whose begin-hour is at most 1, and either the distinct start-stage count is below 5 or the begin-hour span is below 24. Mixed if at least 50 items match and neither the support rule nor the refute rule holds, including the case where at least 95% share a begin-hour of at most 1 while the span is still at least 24 and at least 5 stages occur. Inconclusive with reason underpowered if fewer than 50 items match a stage hour. Inconclusive with reason data-unavailable if either file cannot be retrieved or the stage hours cannot be parsed. Match start-stage identifiers to the stage-series id first, and if fewer than 50 match, also try the stage OBO id. Rows are tab-separated. A header row is used when present; otherwise an anatomy row is id, name, start stage, end stage, and a stage row is id, OBO id, name, begin hours, end hours, with extra fields folded into the name. Confidence: supports 0.60, refutes 0.55, mixed 0.40, inconclusive 0.30. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/hasConfidence 0.6 https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/hasEvidence https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/hasVerdict supports https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/hypothesis If the parts of an embryo come into being in succession, the structures in a vertebrate anatomy ontology will be assigned different start stages spread over at least a day of development, rather than all being present from the one-cell stage. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/inferenceMethod Join ZFIN anatomy items to the zebrafish stage series on the start-stage identifier. Compute the number of matched items, the number of distinct start stages, the max-minus-min begin hour, and the fraction of items on the modal start stage. Apply the thresholds in pass_criterion and fail_criterion. A secondary tally of items with begin hours at most 1 is reported and does not set the verdict. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/passCriterion Pre-registered. Supports if at least 50 anatomical items match a stage with a numeric begin-hour, the number of distinct matched start stages is at least 5, the span from the earliest to the latest matched begin-hour is at least 24, and it is not the case that at least 95% of matched items share one start stage whose begin-hour is at most 1. https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/ontology/preregistered false https://w3id.org/delphi/resource/claim/aristotle-ga02-10 https://w3id.org/delphi/ontology/hasAssessment https://w3id.org/delphi/resource/assessment/aristotle-ga02-10--claim-test--pr-127 https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 http://purl.org/dc/terms/description start stage of each zebrafish anatomical structure, joined to begin hours of the staging series https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 http://purl.org/dc/terms/license https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 http://www.w3.org/1999/02/22-rdf-syntax-ns#type https://w3id.org/delphi/ontology/EvidenceItem https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 http://www.w3.org/2000/01/rdf-schema#label Dataset: ZFIN zebrafish anatomy terms and stage series https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 http://www.w3.org/ns/prov#atLocation https://zfin.org/downloads/anatomy_item.txt https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 http://www.w3.org/ns/prov#atLocation https://zfin.org/downloads/stage_ontology.txt https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 http://www.w3.org/ns/prov#wasDerivedFrom https://zfin.org/downloads https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:5be4ad7a51ee159098497a22c17819d04a19025c22078f0161f87c9aa557299c https://w3id.org/delphi/resource/evidence/aristotle-ga02-10--claim-test--pr-127--dataset-1 https://w3id.org/delphi/ontology/hasChecksum sha256:b5d296611d1b28992f6ff7a576da45c598611de98d308bd8cbddb5ccd49de7f1 https://w3id.org/np/RA-yobo_jRxuZSgL4FQMcn-3onKAYwhXEVLwB06H_RdN8/provenance https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast http://www.w3.org/1999/02/22-rdf-syntax-ns#type http://www.w3.org/ns/prov#SoftwareAgent https://w3id.org/delphi/resource/agent/delphisci-claim-tester-grok-4-7-high-fast http://www.w3.org/2000/01/rdf-schema#label delphisci claim tester (grok-4.7-high-fast; 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